RNA id: AMCG00009418


Basic Information

Item Value
RNA id AMCG00009418
length 2400
RNA type mRNA
GC content 0.41
exon number 3
gene id AMCG00009418
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 37495000 ~ 37499186 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAGCCTGGCAGCCTCTATAAACAGCTGGAGTATTTATTGAAACTTGCTAGCACCCTTTAAAACCTCACCCCTGTAGAAAACTCAGCTCATACAGGAGCGCTTAAATAGCAACACCCCTGCAGTGAGAATCTCAGTTTCTGTCTTCTTGCTTGTCCCCAAAGGACTGGATTTTTTGCCCGTCCCGCCGCAAGTTTTCATCTTCACCTTTCCAGCATGTGCTCCCGCAGTTGTGCCAGGTGTCTTGGTTATACCTTGATACCTTTGGCGCTCTGCTGTATAGTTgctaatattttactttttttcccaAATGGAGAGTTGACATACTCTGAATATTTGTCAAAGTATGTCTGGTACTTTGAAGGGATAGTTGGAGGAGGAATACTGATGCTGGGATCAATTCTAGCGGCTTTGATTGGACTGGCTGGATCTGCATACTGCTTCATTGTTTCTGTGCTGGGCCTAATGCAAGGGCCATTGTGCAAAAATGCACAAAGCTGGGATTACCATTTAAATAATGGTGGAGAGTATTTATTAGACCCTTCCACCTGGAACGACAAATGCCTGGAGCCCCATAACGTGGTCCTGTGGAACGTGGTGCTGTTCAGCATGCTACTGGGGCTCAGCGCTATCGAGGCCTTCATCTGTGCCCTGCAGGTCATCAACGGGCTGGTGGGGGCAATCTGCGGGCCGTGCTGCAGCAGCCAGGAGTATGCCATGAACAAGGCCTGAACACATCCCGTGGAGCGGGCTGTGAGAGGTTGAGGGGGTATAGTGGGGCTGTCAGCGTTCAATTACACTGGAAAGAAcaattttgttacatttcttattctctgccacaaaaacaaacattacaattccAAATATGCTGCATCTTTGTTGTCGTTATTACTCTCTCTCATTTAAATTAGTATATTTTGCCGTCGTTGTGTTTTTTATGGGAGCTGTATTCTAGCTCAGGTTCTGTAGAGAGGATTGAATAGGAGCAGGCGAACACGATGCCACTGTTCTTGACCAGAGAGGCGTCCTCGCTTACTGCAGAGCTTGCGGGGACAACTGGAGGCTCAAGCACAGGgctgtctgtgtatgtctgcTATTGCACAGCCCTTTAAAACGAACGTATGGGCCCAGGGAGAGGAAAATCCAGCTGCTGTGGAATAGTGTGATACTCAGCACACACAAGTGCTCTGTGTGGTTGGGTTGCGGCAGTGATTCGGCTATTTGTACTGGAACCAAAAATAAAGTCTGCTTTACAGCCCTCCACAGTACTGACAATCTGAACATGcaaatccaaaaacaaaacttataGCTATACAGGGATAGTCAGCTTACTTCTGAAATTGAGGGTTGGCCTTTGTATACAGAGTGTCTGGAGTGAAGAATACATGCATTGTGATAGGAATTGATTTAATCCTAATTTATGGAAATCACTGACATGTAATGGTGCTGACtgtaatatgtattgtattgtatttctaagTCAATTTGATCACATTGAGACAAAACAAAGTCAGAGAGGTATGCAAGAGCAGTATTTGAAAGTTTTGAATGCGGTAGGCTATATACCTGTAGAAATGTTCTGTACAAATATGTTAaagtgttatatatatgtatattttatctgTTTGTATTTACGAGTatctaaaaaagtaaaaagaagaGCATTTGGAATGTAAATTATTGCAGTACAAGCAGagaattttatgtttttttctgaaacttcTGTGAGCAGATGCTAATATGGAAGGTTATATTTAGCCAATAagctggttttcattttttggtaatattttgtttaaaaacatatattataaattattttttaaatctaaggtattgtttgttttgtgaaggatttcaaaaattattttttgctgtctgcatttaataaatatttttgtaaacctTTCATCCTATGCCTTTTTGTCTCCTTTTGAACTGTGGTCCCTACTTTGGGAATACTAGTGTTTTGTCTCTGCAGATATCAGGACAGAGACAGTTAAACACTAGCTGTCCTTATCTGTGCCATTGGAGGTCTTTGGTATAATCCATACCTTAATTATATACATGACTTCATTATCTACTAAATAAACAATGTGCCAAACCCTCTCTTGAATGGATTAAAATGTCTGGTATTTGTCCATGGCTGTCATAGAAATGGAGATGTTTCCAAGGAACACATGAGTTATACACTTATTTATGGGGGGCCAGACAGGCCATAATACAaacgtttgtgtgtgtactatattggtttgtgtgtgtacttgtgcatactatattggtttgtacTGTGATGGAATAAAGTTCTGGAGTtgggagttctaatcagaattgaTTAAgtgcacgggaggaacagcgcaacacagaactcaaaggattttaggccagcatgacactgttccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71031 lncRNA upstream 31495 37460042 ~ 37463505 (+) True AMCG00009415
TU70966 lncRNA upstream 197998 37293903 ~ 37297002 (+) True AMCG00009404
TU70962 lncRNA upstream 203335 37285843 ~ 37291665 (+) True G56775
TU70938 lncRNA upstream 299912 37193726 ~ 37195088 (+) True G56754
TU70929 lncRNA upstream 306222 37188568 ~ 37188778 (+) True G56747
TU71098 lncRNA downstream 49127 37548313 ~ 37553141 (+) False AMCG00009429
TU71111 lncRNA downstream 112069 37611255 ~ 37616696 (+) True AMCG00009428
TU71241 lncRNA downstream 564604 38063790 ~ 38068153 (+) True G56982
TU71255 lncRNA downstream 630896 38130082 ~ 38133966 (+) True G56995
TU71304 lncRNA downstream 703608 38202794 ~ 38280479 (+) True G57036
AMCG00009420 mRNA upstream 2511 37477190 ~ 37492489 (+) True AMCG00009420
AMCG00009415 mRNA upstream 34343 37422017 ~ 37460657 (+) False AMCG00009415
AMCG00009414 mRNA upstream 77045 37413764 ~ 37417955 (+) True AMCG00009414
AMCG00009413 mRNA upstream 84629 37405848 ~ 37410371 (+) True AMCG00009413
AMCG00009405 mRNA upstream 129279 37348108 ~ 37365721 (+) False AMCG00009405
AMCG00009421 mRNA downstream 6577 37505763 ~ 37516480 (+) True AMCG00009421
AMCG00009419 mRNA downstream 21137 37520323 ~ 37521453 (+) True AMCG00009419
AMCG00009429 mRNA downstream 31636 37530822 ~ 37605124 (+) True AMCG00009429
AMCG00009428 mRNA downstream 109119 37608305 ~ 37612895 (+) False AMCG00009428
AMCG00009427 mRNA downstream 120316 37619502 ~ 37621390 (+) True AMCG00009427
TU70945 other upstream 127329 37360101 ~ 37367671 (+) True AMCG00009405
TU70668 other upstream 2105673 35388914 ~ 35389327 (+) True G56536
TU70453 other upstream 3463555 34000796 ~ 34031445 (+) True G56368
TU70456 other upstream 3476185 34015670 ~ 34018815 (+) True G56369
TU70069 other upstream 5329635 32161760 ~ 32165365 (+) True G56060
TU71113 other downstream 111157 37610343 ~ 37616283 (+) False AMCG00009428
TU71381 other downstream 943069 38442255 ~ 38457592 (+) True G57105
TU71670 other downstream 1935714 39434900 ~ 39436995 (+) True AMCG00009480
TU71802 other downstream 2448820 39948006 ~ 39949200 (+) True G57430
TU71881 other downstream 2603197 40102383 ~ 40104948 (+) False AMCG00009516

Expression Profile