RNA id: AMCG00009419



Basic Information


Item Value
RNA id AMCG00009419
length 723
RNA type mRNA
GC content 0.63
exon number 4
gene id AMCG00009419
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 37520323 ~ 37521453 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GAGACTGCAGACAAAGTGCTGGACATCTTCAGCACTGTGGAGCCCTCCCAGCTGCCCCATGTGGTGTGCAGCCCCTTCATGAAGAACGCCACCAGCGCGGCCGCCTACTCCCATCTGCAGCACCTGGAGGCCTCGCTGCCCGCTGTCATCGTCACCCTGTGCAAGGCAGCCGTCGCCCTGAAGATGGGCGACCTGGCGCTGTACCGGCAGGAGATGGATCGCCACGCAGAGATGCTGCAGGTGTATGGCTTCCTGGAGGAACCCAGGCTGCTGCTGCATCGGCAGGGGAAGGCGGCAGTGCCCACAGCCCTGGCACAGCACCTGAGCGACATGCAGGATGGCCTGCTGGTGGCCGCCATGGTGGCGCTGCACGAGAACAGCAAGTTGAAGCTGGAGGAGGCGGACTCGTTCTTTCAGGAGCTGTGTAGAGAGGGCAGCAGCCAGGCAGAGAGTGGGCCTCAGCTCCTGGTGGACTTCTGGGAAGCTCTGCTGGTGGCCTCTTCGCAGGGTGCCGTGATCCAGGAGCTGCTGTTCCGCCTGGCCTCGGTGTACATTGACCGCATCGCCAGGAGGGAGAGGTCCGGCATAAAGCCACTAAAGACGGCTGAGGACCTGatcaATTCCTGCTCTCACTACGGGCTGCTCTTCCCCTGGGTGAACGTCATCACCCCCCCCCAGTTCAACCTCACCCACGACTACCAGGAGGACCTCCAGAAACTACAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU71031 lncRNA upstream 56818 37460042 ~ 37463505 (+) True AMCG00009415
TU70966 lncRNA upstream 223321 37293903 ~ 37297002 (+) True AMCG00009404
TU70962 lncRNA upstream 228658 37285843 ~ 37291665 (+) True G56775
TU70938 lncRNA upstream 325235 37193726 ~ 37195088 (+) True G56754
TU70929 lncRNA upstream 331545 37188568 ~ 37188778 (+) True G56747
TU71098 lncRNA downstream 26860 37548313 ~ 37553141 (+) False AMCG00009429
TU71111 lncRNA downstream 89802 37611255 ~ 37616696 (+) True AMCG00009428
TU71241 lncRNA downstream 542337 38063790 ~ 38068153 (+) True G56982
TU71255 lncRNA downstream 608629 38130082 ~ 38133966 (+) True G56995
TU71304 lncRNA downstream 681341 38202794 ~ 38280479 (+) True G57036
AMCG00009421 mRNA upstream 3843 37505763 ~ 37516480 (+) True AMCG00009421
AMCG00009418 mRNA upstream 21137 37495000 ~ 37499186 (+) True AMCG00009418
AMCG00009420 mRNA upstream 27834 37477190 ~ 37492489 (+) True AMCG00009420
AMCG00009415 mRNA upstream 59666 37422017 ~ 37460657 (+) False AMCG00009415
AMCG00009414 mRNA upstream 102368 37413764 ~ 37417955 (+) True AMCG00009414
AMCG00009429 mRNA downstream 9369 37530822 ~ 37605124 (+) True AMCG00009429
AMCG00009428 mRNA downstream 86852 37608305 ~ 37612895 (+) False AMCG00009428
AMCG00009427 mRNA downstream 98049 37619502 ~ 37621390 (+) True AMCG00009427
AMCG00009438 mRNA downstream 509932 38031385 ~ 38059273 (+) True AMCG00009438
AMCG00009444 mRNA downstream 570947 38092400 ~ 38094123 (+) True AMCG00009444
TU70945 other upstream 152652 37360101 ~ 37367671 (+) True AMCG00009405
TU70668 other upstream 2130996 35388914 ~ 35389327 (+) True G56536
TU70453 other upstream 3488878 34000796 ~ 34031445 (+) True G56368
TU70456 other upstream 3501508 34015670 ~ 34018815 (+) True G56369
TU70069 other upstream 5354958 32161760 ~ 32165365 (+) True G56060
TU71113 other downstream 88890 37610343 ~ 37616283 (+) False AMCG00009428
TU71381 other downstream 920802 38442255 ~ 38457592 (+) True G57105
TU71670 other downstream 1913447 39434900 ~ 39436995 (+) True AMCG00009480
TU71802 other downstream 2426553 39948006 ~ 39949200 (+) True G57430
TU71881 other downstream 2580930 40102383 ~ 40104948 (+) False AMCG00009516

Expression Profile