RNA id: AMCG00009420


Basic Information

Item Value
RNA id AMCG00009420
length 2336
RNA type mRNA
GC content 0.50
exon number 12
gene id AMCG00009420
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 37477190 ~ 37492489 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCTGAGTCATGTGACAGGTCTGAGACAccagaaacaaatacagaggACGCCATGTCGTCAGAGCTGAGCTTTTCCTCACGCCGCTCTCCTGTTGTGTGCCTGAATGGCTGTGTGGCCAGCAGCCAGCCATTAGCGTCTAGCATTGGCCTGGATGTTTTGAAGAAGGGCGGTAACGCTGCCGACGCGGCGGTGGCGGTGGCGGCTGCTCTGGCCGTGACGGAGCCCTGCAGCACCGGGGCCGGGGGGGACTGTTTCTGCCTGTTCTATGACTCCAAAACCAAACAGGTGCACGGCCTGAACGGCAGTGGCCGATCCTCTCGCGACCTGACCCTGGCTGCGATTCACAGACTGGGATTTAGCGAGTCAGAACCCATCCCACCCTTCCACGCCCTGAACGTCACAGTGCCTGGCACGGTGGCAGGCTGGTGTGACACCGTTGAACAGTTCGGCAGCAAGAAGCTCTCCCTGCGTGACATTCTGCAGCCTGCCATCGACCTGGCCGAGGGGGGTTTCCCTGTCGCTGACATCACGGCTTATCACTGGGCCAAAGGGGCAGCGGCCTTGGAAAATTCGGGAATGAAGCTTGGGGGGAATTTCCTGATAAAGAACCGGCCGCCAAAACATGGGGAGGTGTTCACAAATGTGGCTTTGGGTCAGACGCTCAAGgagaTCGCTCAGCATGGGAAGCGAGGGTTTTACGAAGGGAGGATAGCGGAGGCTATCGTGGATATTGTCCTTGATAACAGCGGAATCTTGTGTCTGGAGGATCTCAGGAGCCACGGCAGTGCCAGGGTTACACCTATTTACACAGATTACAAAGGTGTGAGACTCTGGGAAATCCCTCCGAATGGCCAAGGAATAGCGGCCCTGATTGCTCTGAATATATTAGAAAACTTCTCAGTCAAAGAGATGGGCCACAACAGCGCTGACTACCTCCACGTCTTGGCAGAGGCTCTAAAGCTCAGTTTTTCGGACACGTTCCGCTATTGCGCCGACCCTGAGAAGGTGAAGGTGCCGGTGGAAGCCCTTTTGTCAAGGGAGTACTGCCAGCAGCGTTCAGAGCTTATCGACATGCAGAAAGCAATTCAACACTGCAAGCATGGGATGTCAGCTGGAGGAGACACTGTCTACTTCTCTGTGGTAGACAAGGAGGGGAATGCCTGCTCATTCATTAACAGTAATTACAGAGGCTTTGGAACCGGCCTGGTGCCAGAGGGCTGTGGATTTACTCTCCAAAACAGGGGGGCCGGATTCTCTCTGGACCCTGACCATGGAAACTGTGTAGCTCCAGGGAAGCGGCCCTACCACACCATAATCCCGGCCCTAGTGACTGACATCGAGACAGGGGGGCTGCTGTGCTCGTTCGGGGTCATGGGGGCCTTTATGCAGCCGCAGGGCCACGTGCAGGTCTTGCTCAATATGATGGAATTTGGAATGAATCCACAGGAAGCCCTAGACGCACCTCGCATTTGTGTTCAGTACAACCCACCTGGGACATGGCAGGTGTTGGTGGAGGAGGGCGTGGGGCAGCACGTGGTGGGGGACTTGCAGAGCCGGGGGCACCAAGTGCTGTGGCCCCTGTCCGGTCACGCCAGGTCAGAGTTCGGCCGTGGGCAGGTCATCGCTGAAGGCAACTGCTGGGAGCGGCCATGTGAAGAGACTAACCGCGCACACAGGGTGCTGTGGGCCGGCTCAGACCCCAGGGCTGATGGCTGTGCTGTGGGGTATTAGGGCGCCAATCTGAATCTTTGATTTTATcttacagattttgttttcttattcaaatTTAATACAGGTGTTATTACATGGTCTGTagtataatttcatatttttacattttaatcaaactATTACATAGTTTGTgcttttatacatatatatgcacataccACTACAACAGCCAAATAGTATTAATACCAAATTACCCTATTCGGGGTACTTTCtcatttttgcactttgaagAAAATCAATGATGAGCATTTCTaccatatttgtttaataatcatatatatttttttaattacacattttaaactgctgttcatctgttattattatttttaatataatcatGAGAAGGCGAGAATTAAAGGTTTAGAATCCAAATCCTCCTGTGACtttgtactggatgaagcagtaATTGTTAATGGGGTGGATGGATGGAATCCAGATTCTTCTAGTCAACCAAACAGATGTATTAATATGctagtgatttttattttattttttctaaatctcTTTTAAATACCACATTATATGAATGACACATGTACACAACTATCTTGTACAACAATCatgaacattatttttctgaaaactgaaactgaaatcatgca

Function

GO: NA

KEGG:

id description
K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71031 lncRNA upstream 13685 37460042 ~ 37463505 (+) True AMCG00009415
TU70966 lncRNA upstream 180188 37293903 ~ 37297002 (+) True AMCG00009404
TU70962 lncRNA upstream 185525 37285843 ~ 37291665 (+) True G56775
TU70938 lncRNA upstream 282102 37193726 ~ 37195088 (+) True G56754
TU70929 lncRNA upstream 288412 37188568 ~ 37188778 (+) True G56747
TU71098 lncRNA downstream 55824 37548313 ~ 37553141 (+) False AMCG00009429
TU71111 lncRNA downstream 118766 37611255 ~ 37616696 (+) True AMCG00009428
TU71241 lncRNA downstream 571301 38063790 ~ 38068153 (+) True G56982
TU71255 lncRNA downstream 637593 38130082 ~ 38133966 (+) True G56995
TU71304 lncRNA downstream 710305 38202794 ~ 38280479 (+) True G57036
AMCG00009415 mRNA upstream 16533 37422017 ~ 37460657 (+) False AMCG00009415
AMCG00009414 mRNA upstream 59235 37413764 ~ 37417955 (+) True AMCG00009414
AMCG00009413 mRNA upstream 66819 37405848 ~ 37410371 (+) True AMCG00009413
AMCG00009405 mRNA upstream 111469 37348108 ~ 37365721 (+) False AMCG00009405
AMCG00009410 mRNA upstream 175014 37298590 ~ 37302176 (+) True AMCG00009410
AMCG00009418 mRNA downstream 2511 37495000 ~ 37499186 (+) True AMCG00009418
AMCG00009421 mRNA downstream 13274 37505763 ~ 37516480 (+) True AMCG00009421
AMCG00009419 mRNA downstream 27834 37520323 ~ 37521453 (+) True AMCG00009419
AMCG00009429 mRNA downstream 38333 37530822 ~ 37605124 (+) True AMCG00009429
AMCG00009428 mRNA downstream 115816 37608305 ~ 37612895 (+) False AMCG00009428
TU70945 other upstream 109519 37360101 ~ 37367671 (+) True AMCG00009405
TU70668 other upstream 2087863 35388914 ~ 35389327 (+) True G56536
TU70453 other upstream 3445745 34000796 ~ 34031445 (+) True G56368
TU70456 other upstream 3458375 34015670 ~ 34018815 (+) True G56369
TU70069 other upstream 5311825 32161760 ~ 32165365 (+) True G56060
TU71113 other downstream 117854 37610343 ~ 37616283 (+) False AMCG00009428
TU71381 other downstream 949766 38442255 ~ 38457592 (+) True G57105
TU71670 other downstream 1942411 39434900 ~ 39436995 (+) True AMCG00009480
TU71802 other downstream 2455517 39948006 ~ 39949200 (+) True G57430
TU71881 other downstream 2609894 40102383 ~ 40104948 (+) False AMCG00009516

Expression Profile