RNA id: AMCG00009421


Basic Information

Item Value
RNA id AMCG00009421
length 4319
RNA type mRNA
GC content 0.48
exon number 19
gene id AMCG00009421
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 37505763 ~ 37516480 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGCAGCTCCAACTTCTGTGCACAAAATACTGCTGCTATTACTACgaattataatttacaatgaACAACTTTCAAAatctcctctttttcttattttatcttGCGGCCGCGGTCTCCGGAGCACCGAGGCAATATTTCATTGGCATCAAAGAGGTGCAGTGGGACTATGCTCCCAGCAAAATGAATTTAGTTTTGAACAAATCCCTGACGGATGACAAGCACGCTGCTACCTTCCTCCAGCGAGGAGAGATGCGCATAGGAAGTGTGTACAAGAAGGCAGTGTACTACCAGTACACAGACGGCTCCTTCACACAGGAATTGGAAAAGGAAAAGTGGCTGGGCTACCTGGGGCCTGTCATCGCTGCGGAAGAGGGAGACACTATTACTATTCACCTGAAGAACATGGCTTCCAGGCCTTATACCATCCACTCCCATGGCATGAAGTACACAAAGGCCAATGAAGGTGCGTTTTACCCAGATGGTACGCAGAAGGAGGAGAAAGATGATGACCATGTCTATCCTAGCAAAAACTACACCTACGTGTGGGAGCTCTCTGGATCCCACGCCCCCACCGAGGATGACACACCCTGCCTGACGCGGATCTACCACTCACACATAGACGCACCAAAGGATGTGTCCTCTGGACTCATCGGCCCCCTCATCATCTGCAAGAAAGGCACACTCGATGTGTTCGGCGACAAAGCTGCCAGCTACCTCTACGCACTGATGTTCACAGTTTCTGATGAAAACCTGAGCTGGTACCTGGACGACAACATCAAGACCTACTGCAGTGCCCCTAAGAAAGTAGACAAAGAAGATGAAGAGTTTCAGGAGAGCAACAAAATGCACGGTGAGATGAGAGCTTTGAAGAGTCAGTTGAATGACATGCGGCTCACAGCGATCAATGGTTACGTATATGGGAATTTGCCGGGGCTGATGATGTGTGTGGGAGACAAGGTGGCCTGGCACCTGTTCGGGATGGGGAATGAGGTGGACATCCACTCTGCCTATTTCCACGGGCAGATCCTGACGGACAGGAAGCACCACGTGGACACCATAAGCCTCTTCCCGGCGACCTTTGTCAATGTCGAGATGATTTCCGTGAACCCTGGGAAATGGCTGCTGGGCTGCCAGGTCAACGACCACGAGGAAGCTGGGATGCAGGCATTTTTTGAAGTGAAGAACTGTTTCCCCAATGTTCACTGGCCCAGGCCTCGGGGTGAAGTCCGGGAATACTACATCGCTGCTGAAGAAGTCATCTGGGATTATGGGCCGACACAGATCAACCAGTTCTCAGGGGAAGCCTTAATATCTGACAGGGATTCAGAGCCATTTTTTGAAACTGGTGCCCACAGAATTGGAGGGAAATACAAGAAGGCCGTTTACGTCGAGTACACAGACAAAACCTTCACCAAACGCAAGGAGAGGACAGCTGAGGAAGAGCACTTAGGAATTCTGGGTCCTGTAATGAGGTCAGAGGTCGGAGATATCATCCGGGTGACTTTTTGGAACAACGCGTCCCGTCCTTACAGCATGCAGCCACACGGGCTGCATTACACCAAAGCCAACGAGGGAGCTTTCTACTTCGGAGGGCAAATGCCCCCATCTGCTGCCTCCCACGTGCTGCCCGGCTCCAACTTCACCTACGAGTGGATTGTTCCCCCAGAGGGTGGGCCCACTGCTGATGACCCCGACTGCATCACTCGCCTGTACTTCTCTGCAACTGATGCGGTGAAAGACACCAGCTCTGGACTGGTCGGGCCCCTGCTGGTGTGTAGGCAACAGACCCTGAAAGCTGGGAAACAGaaaaatgtaGCAAAAGAATTCCATCTGCTGGTGACTGTTTTTGATGAGAACCTGAGTTGGTACCTGAACGAAAACATCCAGATGTTTGCAAGAGCTCCCAGAACTGTGGACAAGGAGGATGTGgacaaggaggatgaggactttGAGGAGTCCAACAAAATGCACTCCATCAATGGGTACATGTATGGGAATCTGCAGGGCCTGAAGATGTGTAAAGGAGACAAGGTGTCTTGGCACCTCTCAGGCCTTGGCTCGGAAGCAGACATCCATGGAATTTATTTCAAAGGCAACACCTTCACTACCAAGGGGACCCGGAGAGACGTGGTTAACCTCTTCCCACATGTGTCCCAGACCGTCATCATGGAGCCTGACGCCATGGGGGAGATGGAGGTCGTCTGCAGGACCACGGACCACTTCAGGGGCGGCATGAAGGCAAAGTATACCGTTGAGAAATGTCACTGGTGGGACTCCAACACGAAACTGCTCACcttcacagacaagaaatactACATCGCAGCCGTGGAGGTGGAATGGGACTACTCTCCCAACCGCACCTGGGAGGATGAGAGGCACAAATTTCATGAGGAAAGCCCTGGCAACGTCTTCATAGAGAAAGGGGAGCGGTTCATCGGCTCCAAGTACAAGAAGGTGGTTTATAGGGAGTTCACTGATGAGAGCTTCACTACACCCAAGCAGAGAGCAGAAGAGGAGGAACACCTGGGAATCCTTGGACCCATGATCCGCGCTGAAGttggaaataaactaaaaatcgTTTTTAAAAACCTGGCGGGGAGGCCCTACTCTATTCATGCACATGGAGTGAAGACTGAAAGCCCTGACATTGTGGAAACCGCCCCAGGCGAGACCCAGACATACACTTGGTTTATTCCCAAGAATGGAGGCCCTGGGGAAGGTGAGGAAGAATGCTCTATTGGGGCCTACTTCTCCACAGTGGATGCTATCAAGGATTTATACAGCGGGTTGATTGGACCCATCGTCATCTGCAAGAAAAACTTGCTGAAGAAGATTGGGCTGAGGAAGGAAATAGAGGAGTTTGCCCTCCTGTTTCTGGTGTTTGATGAGAACGAATCCTGGTACCTGGACGAAAACATCAAAACCTATGTGAAGAATGTGATCTGCAAGGACGACGAGGAGTTCATTGAAAGCAATAAGATGCATGGTATCAACGGCCTGATATTCGGAAACCTGGAGGGGCTGACGATGTACGTGGGGGACAAGGTGTACTGGTACCTGATGGGCATGGGGAACGAGGTGGACATGCACTCGGCCCACTTCCATGGACACAGCTTCGACTACAAGCTGAGCGGGGCTCACCGCGCAGACGTGTTTGACCTCTTCCCGGCCACCTTCCAGACAGTGGAGATGAAGGCGGAGTACCCGGGTACCTGGCTGATCCACTGCCACGTCACCGACCACATCCACGCGGGCATGGAGACCACCTACACTGTGctggagaaagagaAGTCAAAGGGCCCTCTGAGTGCAGTGAAGGACTTTTTCAAAGAGCACTTCAAAGGATAGAAGAACTAGAGGATCAGAAAACTAAACCAACCACATGAAAAGAAATCCCCAGTGTTGATTTGGTCTCATGCTGAGCATTCTGTTCTGTCCTGgatcttaaatatttttttcattctattttGTGATTAGAAATCTATTTCACTTGtcatacttattttaattgcaaaatggATTTCTTAgtaaactgctttaaaaaaaaaaaaaacttttaggATTGAAATTGCTCCTTACTGGATGCGGACTTTTCCTGCTATACTTTGCAGACGTTCCAGAGCCTACGGATCAAAGTCTATAAATACTTCCCCTGCGATTTGAATGCAGGAAGACCAATTCTGCGATGCAGTGAACAGATGAGATGCACCCTCATGAAATCAAGTCATATCCTCAGCACCAGCTCCCACAAGTTGTGCCTTGTAACCAATAACAGACAATGGCATTTTACCTTTGTATTATCATTtagagctttttattttattgtatattatgttGTATTAGCAGACTTATGGTGTACCTACAGGACCACTTAGtggtcacaaaaataaaatggaaacaaaagctGCACGTGTTATTAATACTGAACTTAAAAGTTAAAGGTAAGAAAAATTCACAGTATGGGATAAGTGAAGTATGGGCTCCCCAACTTTGACATGGAGCAGGAAACTCTATAAAAGCATAAACTAAAAGCCTGTGGTGAAATAAACACAACCAGAAGCCTGCTGTGTAACATTTTCCCCCAATGTATAGTTTTCATTATTCCTACAGTGCCCACTTGTGGCCAAGTAATAAAAGTACATGAATCCAATGTGTGAAATGTACAATTCGATTCTTTGGTTCTGTATATTCAGTCCATGAACCCAACACAGGCTGAGGGTAAGAGAACCATGAAGCTGGAACTGtgctacagaaatgttttttttgtttgcttattatttttgtaacaaaaaagtgtaaaaagatgaataaataaaacat

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005507 copper ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K13624 CP; ceruloplasmin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71031 lncRNA upstream 42258 37460042 ~ 37463505 (+) True AMCG00009415
TU70966 lncRNA upstream 208761 37293903 ~ 37297002 (+) True AMCG00009404
TU70962 lncRNA upstream 214098 37285843 ~ 37291665 (+) True G56775
TU70938 lncRNA upstream 310675 37193726 ~ 37195088 (+) True G56754
TU70929 lncRNA upstream 316985 37188568 ~ 37188778 (+) True G56747
TU71098 lncRNA downstream 31833 37548313 ~ 37553141 (+) False AMCG00009429
TU71111 lncRNA downstream 94775 37611255 ~ 37616696 (+) True AMCG00009428
TU71241 lncRNA downstream 547310 38063790 ~ 38068153 (+) True G56982
TU71255 lncRNA downstream 613602 38130082 ~ 38133966 (+) True G56995
TU71304 lncRNA downstream 686314 38202794 ~ 38280479 (+) True G57036
AMCG00009418 mRNA upstream 6577 37495000 ~ 37499186 (+) True AMCG00009418
AMCG00009420 mRNA upstream 13274 37477190 ~ 37492489 (+) True AMCG00009420
AMCG00009415 mRNA upstream 45106 37422017 ~ 37460657 (+) False AMCG00009415
AMCG00009414 mRNA upstream 87808 37413764 ~ 37417955 (+) True AMCG00009414
AMCG00009413 mRNA upstream 95392 37405848 ~ 37410371 (+) True AMCG00009413
AMCG00009419 mRNA downstream 3843 37520323 ~ 37521453 (+) True AMCG00009419
AMCG00009429 mRNA downstream 14342 37530822 ~ 37605124 (+) True AMCG00009429
AMCG00009428 mRNA downstream 91825 37608305 ~ 37612895 (+) False AMCG00009428
AMCG00009427 mRNA downstream 103022 37619502 ~ 37621390 (+) True AMCG00009427
AMCG00009438 mRNA downstream 514905 38031385 ~ 38059273 (+) True AMCG00009438
TU70945 other upstream 138092 37360101 ~ 37367671 (+) True AMCG00009405
TU70668 other upstream 2116436 35388914 ~ 35389327 (+) True G56536
TU70453 other upstream 3474318 34000796 ~ 34031445 (+) True G56368
TU70456 other upstream 3486948 34015670 ~ 34018815 (+) True G56369
TU70069 other upstream 5340398 32161760 ~ 32165365 (+) True G56060
TU71113 other downstream 93863 37610343 ~ 37616283 (+) False AMCG00009428
TU71381 other downstream 925775 38442255 ~ 38457592 (+) True G57105
TU71670 other downstream 1918420 39434900 ~ 39436995 (+) True AMCG00009480
TU71802 other downstream 2431526 39948006 ~ 39949200 (+) True G57430
TU71881 other downstream 2585903 40102383 ~ 40104948 (+) False AMCG00009516

Expression Profile