RNA id: AMCG00009427


Basic Information

Item Value
RNA id AMCG00009427
length 1788
RNA type mRNA
GC content 0.43
exon number 2
gene id AMCG00009427
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 37619502 ~ 37621390 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCAAGACCTCCAGAGGAAGCCATGATAAATGATAAACGATCGTTTTAAACTGTATTGATAACTTAAcgttaatgttattattgtatagTAGAACATATGTAGGGTGTAATATATATTCTGCATCAGGGAAACAGACAGATTTGGtgatgataatattattatacgAGTATTATTTACTATAATTATAAATGCTCAGATAGATTGAGGAGGCTGGTGTTTCGTGCAGACAGGGCACTCAGTCGATGGTGGAGTTATCGAGCGGAGCGGCAGCCTGTTCTGGTGAAAGGATGGTTTTACGCCGACTGCTGTTCACCTTGCTGAACAACGCGCAGGTGATCGAGAAGCTCGCCGAGTCTCGGCCCATCCGCCGGGCAGCGCAGATCACCGCCTTCGCCCTGACCAAGGCGCAGATCACCGGCAGAGACGCGGCGGCCAAGCTGCTCAAATCGGGCACTCTGCGGCAAATCCGAGAAGAGACGGCGGGCAGGATGCCCAGGGACGTGGGGGAGCTGGGCAGGAGAGCTGGGAGAGTTAGGGCGACGTTTGTCAAAGAGTTGAAAGAAGGACTAAGGGACGCTTCCCGAGAGATCAAACCCAAGAACAGAAAATGACGTCCTGACGTAACACACCGCAATACACGTCACAAGAAGTGCGTGTGAACTGTAATATGAGTGAATCATTGTCACTTTTAAACACTGTTGGGGTTGTGGGAATGGGTCAGAGGAACTTGGAcattaaatacagtttatatttatGACCTGTGTCGATTTTCCTGTTTTAAACACAGATCTTAAGTGAACTAATATTGTCACCACAGAGGAATCAGAACCACgaatacaatactgtacataTCAGCAAGGCAGAGTGTGAGATCTTGACCAGGCAGATGATGAACGCATTTCtgaagtgtgtgtatttgtgctccagtgtgtttgtgtctgtagcGAGGGGTCTGCATGTAGTCGGAGATGGGAATGGTCAGCAATTATGGAATTGAGGGTGGGATTATcctgtctaataataataaatggttttGTAAGCTTGTTAGAGGGGAATTTATCTGCAGGGGAAATCAGAAGAAACCAGACTAGAGATGCAGACCAACTCCCAAGTGTGCCTTGCCAGAGCCTCTTTGGCCCAACAGTTGGGAGTTGGAGTTGGTCAGGAGCATTACAGCACACCTGATTCGTTTTCTTCTTCAGTGATCTCTAAATGTGCAGGTTTTCCCATGAAGAAACGCTTCACATTGAAGTTGGCTTGCCGGTAAAGGAAAATGGTGGCATTATTTAATACTtgctatttaatattttagtctTTCAACTCTGCAGCTGAGCCTTAGCCTCATACTCCAAAACAAGCCTCACTGATTCCCACGTTCATGTGTTACCTCCATACACCACAGTGGGGAGCCCTTCTCCAATCATTTTTGTACCTGTGGGTCCTGGCTTGGGACCCTTGAAGAGTTTCAGTGTCTTAATAGAACTTTATGTGTAAACcgataaaatacatgtatttatgtgtttattgtattgtcAGGTGCAGTCATTTTGTGTAGTATGTTCCTCCCAGACCTGTTCTTGTGAACCAAAGGTCACTACACTATTCAACTTTGAACTGGAATAGGCAATAAACCTCAGACACATATCTAGCCTTTATTATCTTCAGTTTATGGCATTTAAGATCAATGTGACATAAAAACCTTACACAAGATagcaatgtattgtattttaattttatttacgaATCACAATTATTCGTATTCAAAGCTTTATGTAGCTATACCTAAG

Function

GO:

id name namespace
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0005739 mitochondrion cellular_component

KEGG:

id description
ko03040 Spliceosome
ko03010 Ribosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71111 lncRNA upstream 2806 37611255 ~ 37616696 (+) True AMCG00009428
TU71098 lncRNA upstream 66361 37548313 ~ 37553141 (+) False AMCG00009429
TU71031 lncRNA upstream 155997 37460042 ~ 37463505 (+) True AMCG00009415
TU70966 lncRNA upstream 322500 37293903 ~ 37297002 (+) True AMCG00009404
TU70962 lncRNA upstream 327837 37285843 ~ 37291665 (+) True G56775
TU71241 lncRNA downstream 442400 38063790 ~ 38068153 (+) True G56982
TU71255 lncRNA downstream 508692 38130082 ~ 38133966 (+) True G56995
TU71304 lncRNA downstream 581404 38202794 ~ 38280479 (+) True G57036
TU71462 lncRNA downstream 1006529 38627919 ~ 38628135 (+) True G57161
TU71465 lncRNA downstream 1011707 38633097 ~ 38633351 (+) True G57164
AMCG00009428 mRNA upstream 6607 37608305 ~ 37612895 (+) False AMCG00009428
AMCG00009429 mRNA upstream 14378 37530822 ~ 37605124 (+) True AMCG00009429
AMCG00009419 mRNA upstream 98049 37520323 ~ 37521453 (+) True AMCG00009419
AMCG00009421 mRNA upstream 103022 37505763 ~ 37516480 (+) True AMCG00009421
AMCG00009418 mRNA upstream 120316 37495000 ~ 37499186 (+) True AMCG00009418
AMCG00009438 mRNA downstream 409995 38031385 ~ 38059273 (+) True AMCG00009438
AMCG00009444 mRNA downstream 471010 38092400 ~ 38094123 (+) True AMCG00009444
AMCG00009443 mRNA downstream 503918 38125308 ~ 38129404 (+) True AMCG00009443
AMCG00009442 mRNA downstream 526585 38147975 ~ 38150946 (+) True AMCG00009442
AMCG00009449 mRNA downstream 573457 38194847 ~ 38206084 (+) True AMCG00009449
TU71113 other upstream 3219 37610343 ~ 37616283 (+) False AMCG00009428
TU70945 other upstream 251831 37360101 ~ 37367671 (+) True AMCG00009405
TU70668 other upstream 2230175 35388914 ~ 35389327 (+) True G56536
TU70453 other upstream 3588057 34000796 ~ 34031445 (+) True G56368
TU70456 other upstream 3600687 34015670 ~ 34018815 (+) True G56369
TU71381 other downstream 820865 38442255 ~ 38457592 (+) True G57105
TU71670 other downstream 1813510 39434900 ~ 39436995 (+) True AMCG00009480
TU71802 other downstream 2326616 39948006 ~ 39949200 (+) True G57430
TU71881 other downstream 2480993 40102383 ~ 40104948 (+) False AMCG00009516
TU72035 other downstream 3369412 40990802 ~ 40994659 (+) True G57604

Expression Profile