RNA id: TU71111


Basic Information

Item Value
RNA id TU71111
length 4249
lncRNA type sense_over
GC content 0.37
exon number 5
gene id AMCG00009428
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 37608305 ~ 37616696 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtttttttaggttcATTTCTTCAACAGCTTCTTTCACAGACAGCTTGTAACCAAAGGATATGAAGGAGTTAAGAGGTGGACCAAAAAGGTTGACCTGTTCACCAAAACTCTGCTCTTGATTCCCATCCACCTGGAAATCCACTGGTCTCTGATCACTGTTGACATCACAAACCAGAACATCCAGTTCTATGATTCGCAAGGCATCCACTTCAGATACCCTGTCGAGAACATCTTGAAATACATTCTGACAGAAgcgaaagagaagaaaaaggtgATCTTTCAAAAAGGCTGGAAAATGATTGTGAGCAAGTGTATTCCACAACAGAAGAACGATAGTGATTGTGGGGTCTTCGTTTTACAGTACTGTAAGTGCCTGGCGTTGGGAAAACCTTTCCATTTTTCCCAAGAGGACATGCCCAGAGTACGCAAAAGGATTTACAAAGAGCTATGTGAATGCAGACTCCTAGACTGACGTGGAACAGCTGTAAACTCGGACCATCAGTTGGTTTATtcgggttttgtttttgttagtttgttttgttctgttatttattccccccccacccccacgccGTTCTAGGTTGGTCAAGTGGACGCTTTATTGAAGGATCCAGTTGAACATTGCACACACAGAGCATGTACTGACGGACgcagttaaataattaaatataaactctGGAGCTGTACTGACTGCGCTGGAAAAAATTTCATATGTGACTGAAACCAGGTATTATCTTGCTTAGTGGCCACTGCAGAGTGGAACACAGGCTCCACACTGAGAGCTCGGCCGGACTCCAGCCCGTAATGTGGCCAGGGTGTGTTACTGACTGAAAGCTGTTTGTGAAACTTCAGTCATCCACCATAGCGAAGTGCTTTCGGAAACTCTGTTCTGGTGAAACATTCCTGTTACCTCACATCGAATTGTTGAACATTTGTTTACAATCATTTGCAAGCAATTCCTATTGTCGGTAGTGCGTGTGCTTCTGCATACTAACGCTGTGTGAAGATGTGcgattctttttcttttccagcgCACTTTAAGCATCCTTACTGCTGAGATTGTTCTTAAGCCTATGCTGCTTTGATAACTTATAAGTATAACCAAACCTCTGTTACCGTTAGAACGTTTAACATGTTTACTCCTGTAGAGTACTATAGAAGAGAGATCAAGTCCTAAAAAACTTGAAAAGGTTGTTTTAGTTAGGGGTtactttcatttaataaaaattatgCAAGTTAATGTAGTTGCACTGCATAAGACAATTAGTGGAAACAACTGAAATCCTGAAGGTGGAGTAGTTGAGGTTTACAGTGAAAAGGCTACTTAATCAACACTGCATGTACATTGTCTTACAGTGAGAACTGATAAAAGCTATCCGTTTGGACCACAATGACTGTCTAGGCTGAATGTATTGTGTAAGGCCTATATAAGACCTGCACCCAGGGTTTGTTCAACTGGTacaacatgtatttctttataagTAAAATGGAGGTCagtgatttgttctttttctgtgttttttttttttttttcctgtgataCCAGAACATGCATGGCTTTTACATCCTTAAGAGTTGGTTGAATATCCTCCTTTTGCAAGAGGTCATCCAAAGTGCTGTGGGAATTTCATATAAGCCCAATCACCATTTCAGGATGAACTAGTGTGGGAATTTTGACTGTTTTGTGTGATAGTCAGAATGTCTTGGAAGAGGTAGCAATTGAATTAAATGTCTTTTCACTGGTTAGTGCAGATacttgtgtttttcaaatagCCCCAATATTACCTCCAAATAAAAGCATGCATGTCTCAAGAAACCACTTCGTAAACCTATTTCACAAAGCAACGTGTGAATCCAAGACTGGTCacaacaaaacttaaaaataaataaaaataaggttGGTATTGTTGAAGTTTTATTACAGTATTGGAGAATGTCTAGATAATTACAAGTGTAGGCAGTTTCTAAAAGGCAGTCCTGTAGTCTAGTGTAGCCATTTAAGATGAACAACAATGCCTGTATCTGTATTATGGTGGCcttatgtttaattttgaatgtttttaaataaaacttctTAAGAAACTAATGCGGAACAAATACAGGGAAACATCAGTCACAATGTCAGTGCATTTtaacatgacattttatttatactgaaGCAGTTTACAATTTGCCTTGTGTGATTTGTACATATGTTCAGCTTGTATGAGGGAATGACATGAACAGCTGTAAAAACTACTTGAAGTGTaacaaaaatgatttgttttgttttttctttgaggTTTTACTGTAGATGTCCccaacagtttaaataaaaataaggtttCAGTAATGCCATTTCTAAGCATTGTCTCATGTCAAATGTATACACTGAATTTTTTACATTAACACTCACATAGTTATAAAAGAACATGTTTAActgtattgaaaatataaaaatcatgtTTACATGCTGGACTCTGATTAAAGTATGCTGTATGTACTTAGTCTGTGTAAAACTGTTTAGAATTCAAAGAATAACCATACATTTAGTAAcctaaaaacataacaaatgtaCATTACAAAAGTGTAAAATGGGTATATTAAATATCAGATACAAAGTGTGCAGGAACTGAATGTGTACGCCAGATGGAAACTGCAGCATTACTGTACAATCTGCTAATTTTGTATAGGGTGTAGCAAGTGTCAGTCATTCTATCTACACAACTCATAATACCAAATTTGTTAAAGCAATAAACAtcagtgattttaaaagcaataatgaaatataatgtgTAGGTCTATTTCTTACTTTATGGGCTATACCTTCCCCCATACATAGGTTTACACAAGCAATGCAATTAAATCACCTTggatatacatacaaacaatttAAAGGGAAAACTGACCTAGAATTGATATTAACTGAAAtcacaaatgcacaaaacagTGAAAGTAATTTTTCCAttatcaattttaattaatggatACACTGGCCTTTTTGGAGGCAAGAAGGGGGTTCTTTTCATTGCTAATATATACTTAAagtaagtaaattataaaagaGAAATAATTGATCAACAAAGTATTtgcaaataatgaaaatcagaaaacaaaccacTATATATGGCAGATACTAAgttgattaatttaatctgaaatagaCAATGCAGAAAAAGCAAGCAAGCCACACCCATGCATTTgcttaattacaaaataaaatccttaGTCAATATGACAACTTtcacattacatatttacacatggGGATAATTTGCCATGGTTTATTAGGAAATccaagtattaaaaaaaaataaaaataaaaaaaatgcttcctTAATGTTATACACAGTATACAGATGTGACAGACATGCTCGTACTCAAACTTAATTGGGGAATTAAGCATTGGTGCTGAGCTGGCAAATTGTCAGATGCCTATCATAGCTTTTCCTACTGTTGTCCTGCTGGTTTCCAGGGTGTGGAGTGCAGAAAGCAGcagcactttttcttttcagtcatTGGCATGGTCAATTTGGTAAAAATATAGTTTCAAAAAGGGtcacaaaacatgaaaacatgaatgatTATTACCTAAATTTACCCAGATCCCATCGAATTGTATATTAGGATAACTAGTATTTGAATCGGCCTTCAGGCACTCTTTGCAGCTGAGACAATTTTCCATATCCACCTCGAGCAGGGTCATAATCTTGTCTGTATTCGTCTCTGACCTGAAAAAACAGgatagcaaaaaaacaaaaaacaacaaaaaaaaacaaaaaacaaaacatggactTATCATTTTTGTATAGTTTTCCCATAGCCCCCCCTCGCGGGGTCATAATCTTGTCTGTATTCATCTCTGACCTACGGAGAAAAAGAAACTTGCTTATTCATGTACAACACTTACATTCgcttttctgaaatgcagaCAGTGCCGTGATCCAGCAGCTTTCAGTCGGACAACTGTTTAAGCTGAATTCCTTTAGAGACAAACAAGCAACCGAGGCCTAAAAGGACACCTAGTAAATcaatacttttaattttgtatcgCTAAAACTGTCAGCTTGGGCAGCGGAAACCGTCTGGAACTTACCTGACCGCCTGACTTTCCGCGACCGTACTGCCGGCCCTCTTTGAAGCCAGCGTCCCAGTCGGTCCTGATAATGCGATCGTCCAGCCTTGTCCCATTAATAAAACGCATGGCATTCTCTGAATCCGCACGTGTGTAGTATCTTGCGTTGGGGTTAaggtattattgtattattta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71098 lncRNA upstream 58114 37548313 ~ 37553141 (+) False AMCG00009429
TU71031 lncRNA upstream 147750 37460042 ~ 37463505 (+) True AMCG00009415
TU70966 lncRNA upstream 314253 37293903 ~ 37297002 (+) True AMCG00009404
TU70962 lncRNA upstream 319590 37285843 ~ 37291665 (+) True G56775
TU70938 lncRNA upstream 416167 37193726 ~ 37195088 (+) True G56754
TU71241 lncRNA downstream 447094 38063790 ~ 38068153 (+) True G56982
TU71255 lncRNA downstream 513386 38130082 ~ 38133966 (+) True G56995
TU71304 lncRNA downstream 586098 38202794 ~ 38280479 (+) True G57036
TU71462 lncRNA downstream 1011223 38627919 ~ 38628135 (+) True G57161
TU71465 lncRNA downstream 1016401 38633097 ~ 38633351 (+) True G57164
AMCG00009429 mRNA upstream 6131 37530822 ~ 37605124 (+) True AMCG00009429
AMCG00009419 mRNA upstream 89802 37520323 ~ 37521453 (+) True AMCG00009419
AMCG00009421 mRNA upstream 94775 37505763 ~ 37516480 (+) True AMCG00009421
AMCG00009418 mRNA upstream 112069 37495000 ~ 37499186 (+) True AMCG00009418
AMCG00009420 mRNA upstream 118766 37477190 ~ 37492489 (+) True AMCG00009420
AMCG00009427 mRNA downstream 2806 37619502 ~ 37621390 (+) True AMCG00009427
AMCG00009438 mRNA downstream 414689 38031385 ~ 38059273 (+) True AMCG00009438
AMCG00009444 mRNA downstream 475704 38092400 ~ 38094123 (+) True AMCG00009444
AMCG00009443 mRNA downstream 508612 38125308 ~ 38129404 (+) True AMCG00009443
AMCG00009442 mRNA downstream 531279 38147975 ~ 38150946 (+) True AMCG00009442
TU70945 other upstream 243584 37360101 ~ 37367671 (+) True AMCG00009405
TU70668 other upstream 2221928 35388914 ~ 35389327 (+) True G56536
TU70453 other upstream 3579810 34000796 ~ 34031445 (+) True G56368
TU70456 other upstream 3592440 34015670 ~ 34018815 (+) True G56369
TU70069 other upstream 5445890 32161760 ~ 32165365 (+) True G56060
TU71381 other downstream 825559 38442255 ~ 38457592 (+) True G57105
TU71670 other downstream 1818204 39434900 ~ 39436995 (+) True AMCG00009480
TU71802 other downstream 2331310 39948006 ~ 39949200 (+) True G57430
TU71881 other downstream 2485687 40102383 ~ 40104948 (+) False AMCG00009516
TU72035 other downstream 3374106 40990802 ~ 40994659 (+) True G57604

Expression Profile