RNA id: AMCG00009429


Basic Information

Item Value
RNA id AMCG00009429
length 5529
RNA type mRNA
GC content 0.60
exon number 34
gene id AMCG00009429
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 37530822 ~ 37605124 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCACAGAGCCCAAGGGCCTGGCAGCAGCAGCTGGGGCATGGCTGTGGGTGTGGGCAGCGTCTGTGCCGTGCTGATGGTGGTGCACGTGGCCCTCGTGCCCCTCCTGGCCGTGGGCATGACCTTTGCCATGGTGATGCCCATGCTTGTGTCCGTGATGCTCGTGGCTCTCGTGCCCCTCCTGGCCGTGGGTATGGGCAGGGTCTTTGCCATGGTGATGCTCGTGCTCATGCAGGTGGGGGTGCTGGTGTTCGTGATGCTCGTGGCTCTCGTGCCCGTGGACATGGGCAGTGTCGTTGCCATGGTGATGGCTGTGCTCCTCGTGGGCACCGTCGTCTTTGGCCTTCAAGTGCTTCTTCTTCTCAGCCTGGGATGCCTGGAACacatagcacacacacacaggctgctcAGAACACCAACacgcagcacacacacacacgctgctCACAGCACCAACACGCAGCACACTGATGGGCACTACTCACGACAGGCTAACTCCGCAGCCGCCAGGGCATGGGGGTCCTCGCAGGATCCGGGCTGCTCCGCGGCGGGGGCGGCGGTCTCGGCTCTCACCCAGCCACTCAGCAGCTGGGCGCACAGCAGCAAGCACACATACTGCTTCATCCTCTCACAGCTCAGCACAGGTCCAGTAGTCCACTGCTTACAAGATGGAGCAATACCGGACCATATTTATACGGTGCGTTATCTAGTAACCCCTGTGGCTCCCAGCATGACCCGGACTTTGCTCGGCACTGATGAGAAATCTGCAAATAAGACCTTCATGGTGATTCCGCATTGCattgtgggggagagagagaaacacttaGTTCATGCTGGAAGACGGTCACCCTACTATGTCGATGGGGTGGTGGAAGAGTGGGTCCTCTCCAAAGAGCTCCTGCAGCAGGGGATGCACATTTTTGGGCTTTCCTGGACACCTCATAGAGAGGGTGCTGGGAAAGGGCAAGAAGACTGGATCCTCCTCACCAGTCTCCGGCACTGTCTCGGGAACAACCAGGATGCCAGTGGGATTGGCAGGCTGCTCCCTCTCTGGCTGGTCTGGGAAGATGGGCAGGGGCACGGGCTGGGCGGGGAAGGAAGTGGGGTACTCATCGTGGAAGGAGGGCAAGGTGAAGAGCTGCTTCAGAGCAGGGAGGTACTGCACTGTCCCCAGCGGGCGCTCGGGAGTTGGGGAGGTGGGTGCAGCAGGGGTATGGTCGTGGTGGTGTTCGTGGGGATGAAGGTGAGTGTGTCGATGCCGGTGTCCCAGGCGTCCCCCGTGACTGTGGCCCGTCTCCAGCAAGCGATGACAACTTACTGCAAACTCGCAGCTCATCAGTTCACATTCGGCAACGTGGATGATGTCAGTGCCATTGGAGCACACCGTTTCCTGAATGATGAATTCCACAAAGTAGAATTCACCGAAATCCCACTAGAAGCAGATGGTGGAGGGGCGGTTCAAGCTGAAGACGAAGCCCTCGCTGCGGTCAGTGTTGATCTTGCCCAGGGCCAAGTCTGCAGCTGCCAGGGCGTGGGGGTCCTCACAGGAGCCGGGGTGCACGGGAGAGGCACGCCACCTCCCCACAGTGCTGCAGCCACGGCCTGGCATTCAGAGCTCGGGCAGCAGGATGTCATGGGTGGCGAGTCTTGCCCGGGCAGGTACTTGGGAATGGTGGAGAGTGATGTAGCAGTGGGCTGTCCGGTGCCAGGCTGGGGAGCTCTTGAGCATGGTGGGGGGGTCCTTGGGGATGTTGTGGGGGGTGTCCTTGGGGTGGGTGGTGAGGTGGTCCatgaggagggggtgggggatgaTGGAGGAAGGGGGGGCCCATTGGCATGTGGTGAGGAGTCCAATGTGTGGGGTGTGGGTGAGGCCAATGTGTGGGGTGTGGGTGAGGCCAATGTGTGGGGTgcgggtgggggtgggggtgtgggcCTGGGCGTGGatgtgggtgggggtgggggtgtgggcATGGGTGAGGGTGctggtgtgggtgtgggtgtgggccTGGGTGCGGGTGTGGGTGTGGGCCTGGGTGCGGGTGTGGGTGTGGGCCTGGGTGCGGACATGGGTGTACTGCGTGTGAATCAGTGCACTTACAGCCTGGCTCTCATTGAGGGCAACACATTTCTCTTCATCCTCGGGCTTCACCTGGTCTGTGCAGTCAGTCTCCACAATGGCAAATTCAGCAAAAAGCCCACTCTACCCACCTCTCTGAGCACACTGTTGTCTCTGATTGTATTGAGTGCATATTTGTACCCGTGGTGGTGCTCGGCGTTGATGAGCTCCAGTGCTGCCCGAGCAGCTTCCTCCACCTCGGGCGAATCGCAGGCTATGAGGCGGAATGGTAAGGCAACCACAGGAGGTGCCAAGGAGACTCCAACTCCAGCATCAACAACTGCCGGCGCCTCGGAGGGAGCAGAGGGAGCATTTGACGGCGACTCCACCACTTGGTCCATCACCTGTCTCTTCACTTTCACTGGCGGCACAGCCTCTGCAGACTCGGAGGAGAGCAGGGCCGTGAAAGCCCAGGCCGTGGGTTTTGAAGTCATGGTGGGCTGGGTGATGGTGGTGCCCAGCGCTACCCCGGATATGATAGTGCACAGTGTGGGGATGAGCGGGCTCGGTGTCATTTGCCATAATCGGGAGCGCCGGGCCCTGGAACACAGGAGGGAAGGGAGAACTGGATACCTGTGCAGGAAAGATGTCACAGTCCACGGTTACATTATCCAAATGATCCCCTGGGCGCAGGCTGGCCTTGCAGAAGCCGTGGCGCTGGAAACAGAGAAACAGGATGGATTTAGAGGGGCCAGCCTCAGACGGAGCCAGGGGGACGCAGTGGTCATGGTGATCCTCGGCAGCGAGGCTGGTGCAGTTCGTCTCCACAATGGCGTACTCGACAAATGCGAACTCTTCCGGCTCGGGCAACTCTACGTTAAACTTGTGGAGCGACTTGGTGATGGCCTGCTGACCGACGCTGTCGTTGAGAGGGATCAGGGTGTATTTGTATCCATGGTGGTGCTGGGTGTTGATGTGGTCGACGGCCACCTGGGCAGCTTCCTCTGCGTCCGTGGAGTCGCAGGGCAGGTGGCGCACATTTGGGACCCCAGCGGTCAGATACTTGTGTTTGGCAAAGTCAGTGCAATCCCAGTGCTTAACCTGAGCCCCAAAGTCAACTCCGAGCTGCTGCGCCAACGCGTAACTGAGCCAAAAGGGACAGCAGGGCGCACAGGGCTGTGGCGAAGGGAAGACGCTAAAGGCACCACGTTTGCTGTCTATGAACAGGATGTTACTCTGCCAGATGAGCCTGCTGTTGTGGGGCAGTCTGTTGCCGAGGACGGGGAGATCTCGGAGATGATCAACAGTGCGCGGTGCACCTCCCGCTGCCTGGCTCTGCACATCACCCTGCTCAAGCACACCCAGTTCTGTGGGTGGGGAAGTAACAGGAGGACCCTGTTGCAGACTGTCTGGATGAATTGCTGTGCTGATGttgaggctgtgctgctggctATGGTTGAGCCCCTGATCTTTGCCCACCTGCGTATCTGGACTGCTAATGAGAGTGGGCTGCAGAGCACAACAcaggggagGAAAACGGAGCCCCAGGAGGCACCTCCACAGGAGGGTACACCTCCGCTGGACAGGaGCAGGTTTCCTGAGCACATCTTACAAAACAGATTGATCCTGGGCTCTTGTGCCTTGGCTAGGCAGGCCAGATGTTTCACGGCCTGTTTTGACACCAGGAGACTGCGACCCGTCAAGCACAGGGACCCCTGTTTTGTCTACCGCTCAATAACGAACTGCTTCGGAAACCGATCGACCTGTCAGGCTACACGGGCATTCGCAGGGTTTGCTTTGATTAAGCGTCCGTTACTTCAACTTCAAGTTCTTGTGCGGCCAGCTGGGTCATCCAGACAGCTGCAGCCCCTGTTCTCCCACTGTCCCCAGCTGAGGGCTGTCATCACGCTGTCTGTGCCACTCTACCCAGAGCCCAGCAGAGAATGTGAGCTGTTCTGCGGTTGTGTAGGCATGTGTAAACCTTTAAATTCACTTGATACGAATGGAATTTCGCAACGCTTCTCTCCAATGAAGGATGCAGCTTCACATGTGGTTTCTTTCACGAAGCACCACGAGTGTGTGACCAGCTACGAGTTCCTCATGTCCATCCAAGCCCAGAAGCAGGGAGACTGCCCACCCCCCCAGAAGGCCTCGGGTTTTGCGGCCGCCTGTGTGGAGGGCTGCAGTGAGGACCGCGAGTGCTCCGGACACAGGAAGTGCTGCTCCAACGGCTGTGGCCACACCTGTGTTCCTCTGAAGCCCAGGAAGGACATGACGTTCCAGGAGGCGGCGGACGGGCAGGTGGAGGTGTCCTGGATGTCCAAGTTTAATGTGTCTGTAGAGCCCGTGCTCTATGTCCTGCAGAGACGCTCGAACTATGGCATTCACCCCAGTGAGGACGAGGCCACGCCCTGGCAGAATGTCGTCATGACCCCAGAGGAGCGGGCGGTGCTGGAGGACATGCGACCGCACCGCTGGTACCAATTCAGAGTGAGTGCCGTCAACGTCCACGGCACACGCGGCTTCACCACACCCAGCAAGCACTTCCACTCATCCCGAGACCCTGTCCCGCCTGAGACCCCAAGGAACATGAGGAGGGGAAATTTCACAATGAGAGGCgatgggtgtgtgggtgtgagggTGTCGTGGGACGTCCCGCAAGAGGAGGACCTCCCCGTTCACCACTACAAGGTGTACTGGAGCTCCCAAGCACCCCCCCGCAGAGTGGGGCTAGCTGACCAGAAGGAAAACTCCAAATCCACTGAGGGGGTTGCTCCTGAGGTTGATCTTGAAGGGCTACAGCCCAACACGGTGTACCTGGTCCAGGTGCAGGCCATTGCCTACTGGGCACAGAAACGCCTGAAGAGCAGGAAGGCCCAGCTGGTCCTAACCACACCTCCCACAGATTCCCCTGGCAGCCCTGCCCAGGGCCGGCCGACAGGTGAGGTGTCCAACGAGCTGCCTGGCTCTCCCACTGTGCCCAGCCTCCTGAGGATAGACGCTGCTGCCCCGCACTACCACAGCAACCAGTTGCAGGGTACTCACTTTGTTATCACTGGCCTGGAGTTTGCCTGCAAGTACAGTGTGTCGGTGAAGCCCGTGTCCACGACAGGCCCGGGGTCGGAGGTTGTGACCTCTGTCACTACCCCGCCGTGCTCCTCGGTGAAAGGCAGGGGGGCGAAGTCTCTGTCCTGTGGGCGAGAGGATCGCCACCTGCTGGCCAGGAAGATAAGGCTGCGGCCGGAGAGGCTGAGCGCAGCCTTCCAGACAGTGAACGGCTCAGTGTGGGGGCACTTCCAGTGGCAGCTGTCCCTGACCCCCCCGCCATCGCTGGCAGGGTTCCAGGATCAGCTGTCCCTGTCTGTGGAGCACCTGCAGGCCGACAGCGTGTACAAGGTGCAGGTGCAGCTGTTGACCCCCACAGGTGGCGGCCCGGCCATCGTCAAGATTTGGGACTTAACATCATACTGA

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05020 Prion disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71031 lncRNA upstream 67317 37460042 ~ 37463505 (+) True AMCG00009415
TU70966 lncRNA upstream 233820 37293903 ~ 37297002 (+) True AMCG00009404
TU70962 lncRNA upstream 239157 37285843 ~ 37291665 (+) True G56775
TU70938 lncRNA upstream 335734 37193726 ~ 37195088 (+) True G56754
TU70929 lncRNA upstream 342044 37188568 ~ 37188778 (+) True G56747
TU71111 lncRNA downstream 6131 37611255 ~ 37616696 (+) True AMCG00009428
TU71241 lncRNA downstream 458666 38063790 ~ 38068153 (+) True G56982
TU71255 lncRNA downstream 524958 38130082 ~ 38133966 (+) True G56995
TU71304 lncRNA downstream 597670 38202794 ~ 38280479 (+) True G57036
TU71462 lncRNA downstream 1022795 38627919 ~ 38628135 (+) True G57161
AMCG00009419 mRNA upstream 9369 37520323 ~ 37521453 (+) True AMCG00009419
AMCG00009421 mRNA upstream 14342 37505763 ~ 37516480 (+) True AMCG00009421
AMCG00009418 mRNA upstream 31636 37495000 ~ 37499186 (+) True AMCG00009418
AMCG00009420 mRNA upstream 38333 37477190 ~ 37492489 (+) True AMCG00009420
AMCG00009415 mRNA upstream 70165 37422017 ~ 37460657 (+) False AMCG00009415
AMCG00009428 mRNA downstream 3181 37608305 ~ 37612895 (+) False AMCG00009428
AMCG00009427 mRNA downstream 14378 37619502 ~ 37621390 (+) True AMCG00009427
AMCG00009438 mRNA downstream 426261 38031385 ~ 38059273 (+) True AMCG00009438
AMCG00009444 mRNA downstream 487276 38092400 ~ 38094123 (+) True AMCG00009444
AMCG00009443 mRNA downstream 520184 38125308 ~ 38129404 (+) True AMCG00009443
TU70945 other upstream 163151 37360101 ~ 37367671 (+) True AMCG00009405
TU70668 other upstream 2141495 35388914 ~ 35389327 (+) True G56536
TU70453 other upstream 3499377 34000796 ~ 34031445 (+) True G56368
TU70456 other upstream 3512007 34015670 ~ 34018815 (+) True G56369
TU70069 other upstream 5365457 32161760 ~ 32165365 (+) True G56060
TU71113 other downstream 5219 37610343 ~ 37616283 (+) False AMCG00009428
TU71381 other downstream 837131 38442255 ~ 38457592 (+) True G57105
TU71670 other downstream 1829776 39434900 ~ 39436995 (+) True AMCG00009480
TU71802 other downstream 2342882 39948006 ~ 39949200 (+) True G57430
TU71881 other downstream 2497259 40102383 ~ 40104948 (+) False AMCG00009516

Expression Profile