RNA id: AMCG00009434


Basic Information

Item Value
RNA id AMCG00009434
length 543
RNA type mRNA
GC content 0.56
exon number 6
gene id AMCG00009434
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 37716157 ~ 37739072 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGACAGGCTGACCAGCAGCCCTGTTGTGTTTCTGGGGCTGAAGAGATTCTGCATGTTGTGTTGCAGAGCCACGCTGGCTGTGCGCTGGGGCAGAGATGGGGGCCTGCGGTGGCCACAGCTCTGTGCAGACCACAAATACAGGTACCAAGATGAAGACACGCCTCCACAGGAACACAGTTCGCCACACCTCACCAATGAGATGAAAGGGCCCGAGCTGGTCCACGTGTCGGAGAAGAACCTCTCTCAGATTGAGAATGTACACGGCTTCGTCTCTCACTCGCATATCTCCCCTATGAAGTACTCTGTGCTGCTGCGGCTGCGTGTTTTTATTGAGTGCACGGTGTGGTCTCTGCACCTGTGCGTGCGCGCTGTGTTGGGCTGTGCCTCAGAGACCTCAGCTGCAGTAGAGTCCCTGGAATGCATCTTCGACGGCCCGTCGGCTTTAGGCAGCGATGAGGTCCCTGCTTCCGTTCTGCCGGCCTTGTACACACAAAACGGGTCCCTCTCACAGttgcTGACCCctaaatcaatacaattctGA

Function

GO:

id name namespace
GO:0044464 obsolete cell part cellular_component
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71067 lncRNA downstream 198503 37515969 ~ 37517654 (-) True G56861
TU71046 lncRNA downstream 246849 37467273 ~ 37469308 (-) False AMCG00009417
TU71032 lncRNA downstream 293636 37418414 ~ 37422521 (-) True G56831
TU71016 lncRNA downstream 348488 37315570 ~ 37367669 (-) False G56818
TU71015 lncRNA downstream 410167 37300544 ~ 37305990 (-) True G56818
TU71208 lncRNA upstream 167333 37906405 ~ 37907571 (-) False AMCG00009437
TU71277 lncRNA upstream 379356 38118428 ~ 38118843 (-) True G57013
TU71279 lncRNA upstream 386077 38125149 ~ 38125363 (-) True G57015
TU71280 lncRNA upstream 386909 38125981 ~ 38127340 (-) True G57016
TU71281 lncRNA upstream 388396 38127468 ~ 38127678 (-) True G57017
AMCG00009431 mRNA downstream 34319 37673133 ~ 37681838 (-) True AMCG00009431
AMCG00009432 mRNA downstream 54094 37638539 ~ 37662063 (-) True AMCG00009432
AMCG00009430 mRNA downstream 82284 37621294 ~ 37633873 (-) True AMCG00009430
AMCG00009433 mRNA downstream 95782 37616059 ~ 37620375 (-) True AMCG00009433
AMCG00009424 mRNA downstream 156624 37554813 ~ 37559533 (-) True AMCG00009424
AMCG00009436 mRNA upstream 33508 37772580 ~ 37802847 (-) True AMCG00009436
AMCG00009435 mRNA upstream 120025 37859097 ~ 37865238 (-) True AMCG00009435
AMCG00009437 mRNA upstream 150430 37889502 ~ 37908968 (-) True AMCG00009437
AMCG00009440 mRNA upstream 189234 37928306 ~ 37933645 (-) True AMCG00009440
AMCG00009439 mRNA upstream 202999 37942071 ~ 37954055 (-) True AMCG00009439
TU70990 other downstream 496081 37215960 ~ 37220076 (-) True G56800
TU70712 other downstream 1843560 35872123 ~ 35872597 (-) True G56568
TU70685 other downstream 2176347 35538887 ~ 35539810 (-) False G56546
TU71449 other upstream 841213 38580285 ~ 38582820 (-) True G57155
TU71520 other upstream 1096244 38835316 ~ 38837564 (-) False AMCG00009472
TU71924 other upstream 2409653 40148725 ~ 40157471 (-) False AMCG00009521
TU72548 other upstream 4930055 42669127 ~ 42673707 (-) True G58025
TU72928 other upstream 5743349 43482421 ~ 43945297 (-) True G58333

Expression Profile