RNA id: TU71208


Basic Information

Item Value
RNA id TU71208
length 547
lncRNA type sense_over
GC content 0.48
exon number 2
gene id AMCG00009437
representative False

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 37889502 ~ 37908968 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCCACCTTGGTCCGCCATTTCGTAGCGCTAGAAGAAGCAGCTTCTGCGCCGTCCTGTCATGGAGGAACAACAGGCCGTCTTTGTTGCGCCGTGCAGGGCGCTGTGGAGGATAACGACGCACGGCGTGTGAGGCTGCGGCGCCATGACAGAGCAATGGCCGCAACTCCATTTTGCGTGTCCTGTGCGGGatgactttgtttttttttttctcctttgtttctttcattgtttttgatCAATTAAATCACATTGCAACGTGTACAAGATCACGCGTGTGGCCTGATAATTGAATGCAGCATTCTATTCTTCTTGATTCATGTAGGCTAATTAAATTAACGGGATCGTCTTGCAGGACAGGATACTTTCCCCGCATCTGAAAAGACTGCAGCTTCTCCCAAAggggATTGTATGCGGTGGGGGTAAGTTTCCACAAAGCTGCCACACGATAACAGCTTTAAAGCCAAGGAGCAGACAGATTAAAACTGCAGAATGGCTGGATTTGGACTCCTGCACATGGAACCAACCATGTGTTGTCAATAATGTAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71165 lncRNA downstream 172217 37636705 ~ 37734188 (-) True G56927
TU71067 lncRNA downstream 388751 37515969 ~ 37517654 (-) True G56861
TU71046 lncRNA downstream 437097 37467273 ~ 37469308 (-) False AMCG00009417
TU71032 lncRNA downstream 483884 37418414 ~ 37422521 (-) True G56831
TU71016 lncRNA downstream 538736 37315570 ~ 37367669 (-) False G56818
TU71277 lncRNA upstream 210857 38118428 ~ 38118843 (-) True G57013
TU71279 lncRNA upstream 217578 38125149 ~ 38125363 (-) True G57015
TU71280 lncRNA upstream 218410 38125981 ~ 38127340 (-) True G57016
TU71281 lncRNA upstream 219897 38127468 ~ 38127678 (-) True G57017
TU71282 lncRNA upstream 221413 38128984 ~ 38129202 (-) True G57018
AMCG00009435 mRNA downstream 41167 37859097 ~ 37865238 (-) True AMCG00009435
AMCG00009436 mRNA downstream 103558 37772580 ~ 37802847 (-) True AMCG00009436
AMCG00009434 mRNA downstream 167333 37716157 ~ 37739072 (-) True AMCG00009434
AMCG00009431 mRNA downstream 224567 37673133 ~ 37681838 (-) True AMCG00009431
AMCG00009432 mRNA downstream 244342 37638539 ~ 37662063 (-) True AMCG00009432
AMCG00009440 mRNA upstream 20735 37928306 ~ 37933645 (-) True AMCG00009440
AMCG00009439 mRNA upstream 34500 37942071 ~ 37954055 (-) True AMCG00009439
AMCG00009441 mRNA upstream 156255 38063826 ~ 38088124 (-) True AMCG00009441
AMCG00009447 mRNA upstream 181785 38089356 ~ 38092156 (-) True AMCG00009447
AMCG00009448 mRNA upstream 187402 38094973 ~ 38105793 (-) True AMCG00009448
TU70990 other downstream 686329 37215960 ~ 37220076 (-) True G56800
TU70712 other downstream 2033808 35872123 ~ 35872597 (-) True G56568
TU70685 other downstream 2366595 35538887 ~ 35539810 (-) False G56546
TU71449 other upstream 672714 38580285 ~ 38582820 (-) True G57155
TU71520 other upstream 927745 38835316 ~ 38837564 (-) False AMCG00009472
TU71924 other upstream 2241154 40148725 ~ 40157471 (-) False AMCG00009521
TU72548 other upstream 4761556 42669127 ~ 42673707 (-) True G58025
TU72928 other upstream 5574850 43482421 ~ 43945297 (-) True G58333

Expression Profile