RNA id: AMCG00009441


Basic Information

Item Value
RNA id AMCG00009441
length 6768
RNA type mRNA
GC content 0.46
exon number 21
gene id AMCG00009441
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 38063826 ~ 38088124 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGCGATTTAAAAATAGCATCCTCTCtgcctgctctccctctccctctctctctccctcacacacacactgtggaaGCAGGAATGAGAAGATGGCTGCAGATCTTGGCGAGCTGCTAGTCCCTTACATGCCCACCATCAGAGTCCCCAGGACGGGCGACAGGGTTTTCAAGAGCGAGTGCGCCTTCTCCTTCGAGTCTCCCGAGTCCGAAGGCGGCCTCTACGTGTGTATGAACACTTTCCTGGGTTTTGGCAGGGAACACGTGGAGAGGCACTACCGTAAGACTGGCCAGTGTGTTTACATCCACCTGAAACGAACTATCAAAGAGAAAGCCACAGGAGCCTCGGGGGGTGTGGTGCCAAGGAGGAGAAATGGAAAAGTTTTTTTAGATTTAGAGCTGAACCAGGATTTTAATGGAGACGATTATGAATATGAAGACGAAGCCAAATTAGTGATATTCCCAGACCATTTTGAAATCCCCTTGCCCAATATTGAAGAACTGCCTGCACTGGTCACCATTGCCTGCGATGCGGTGCTCAACTCGCCGTCACCCTACAAGAAGCAGGAGCCCGACTCCTGGGAGGACGAGGTTCAGGTGTCCCGACATGCGAGGAGCCTGCGGCAACTGGACAATGGGGTCCGAATACCACCCAGCGGCTGGAAGTGTGCCAAGTGCGAGCTCCGGGAGAACCTGTGGCTGAACCTGACAGACGGAGCATTGCTTTGTGGGAAATGGTTCTTCGATGGCAGCGGGGGGAACGGACACGCCCTAGAGCACTACCGAGAGACCAACTACCCACTGGCTGTCAAACTGGGCACCATCACCCCCGATGGAGCCGaCGTGTATTCTTTTGATGAGGAGGAGGCGGTGCTCGATCCACACTTAGCAGAACATTTATCACACTTCGGAATCAACATGCTTCAGATGCAGAAAACGGAGAACGGCTTCACCGACAATGAGGTGAAGGCACGGGTCAGCGAGTGGGAGGTCATCCAGGAGGCGGGGCTGAAGCTAAAGCCAGTGTACGGCTCGGGCTACACCGGCATCAAGAACCTGGGAAACAGCTGCTACCTCGCCACGACTATGCAGGTGCTCTTCAGCATCCCAGAATTCCAGAGAGCATACGTGGGGAATCTACAGAGGATATTTGACTATTCTCCCCTGGATCCATCGCAAGATTTCAACACACAGATGGCCAAACTGGGCCATGGCCTCCTCTCTGGCCAGTACTCCAGACCTCCAGTGAAGTCTGAGCTGATAGAACAGGTGATGAAAGAAGACTACAAGCTCCAGCAGCGAGGGATCTCCCCCAAGATGTTCAAGGCCCTGAGGAACAGCGAGGGCTCGGAGAACCCCAGCGACGTCTTCCGCTTCCTGGTGGAGGAGCGCATCCAGTGCTGCCAGTCCAGGAAGGTGCGCTACTCACAGCGGGTCGACTACCTCATGCAGCTGCCTGCCCCCATCGAGGCGGCCTCCAACCGAGAGGAGCTGATTGTTTACGAGACGAAGCGGCGGGAGGCGGAGGCCAATCGGAGGACCCCCCCGGAGCCGGTGAGAGCGCGCATCCCTTTCAGCGCCTGCCTGCAGGCCTGCAAGGAGCCTGAGAACGTCAACGACTTCTGGAGCTCAGCCCTGCAGGCCAAATCCGCCGGGGTCAAAACATCCCGTTTCGCCTCATTTCCTGAATACCTGGTTGTACAGATTAAGAAATTCACCTTTGGAGTGGACTGGGTGCCTAAGAAATTAGACCTCTCCATAGACATGCCTGACTTCCTAGACATCTCACACCTGCGCGCCTCGGGGCTGCAGCCCGGGGAGGAGGAGCTGCCTGACCTCGCGCCGCCCATTGTCATTCCTGATGACCCCAGAGaTAACTCGATGAATAATTTCATGGACTCTCCCGACATCGACGAGTCTTCGGTGATGCAGCTGGCAGAGATGGGGTTCCCACTGGAAGCCTGTCGGAAGGCAGTTTACTACACGGGAAACATGGGCGCTGAGATGGCTTTCAACTGGATCATAGCCCATATGGAAGAGCCAGACTTCGCGGAGCCGCTTGCGCTCCCGGTGTTGAGCGACGACGTGCCACCTGCCGGGGGTGTGGTCCCAGGGCTTGACAGCCAGCCCCCCGAGGAGAGCGTGGCAATCCTCACCTCCATGGGTTTCTCCCGGCACCAGACCATCCAGGCCCTCAAAGCCACGAATAACAACCTGGAGAGGGCGCTGGACTGGATCTTCACCCACCCCGGCAGTGAGCAAGAGAGCGAGGCGGCTTCAGAAGCTGGCGACATGGAGGCCAACGACAATGCCAACGACAATGCCAACGCCAACGCCAACACcaaccccaccacccccacgAACCCAGAGCCCACCGGGCCACGAGTCCGGGATGGCCCAGGCCGGTACGAGCTCTTTGCCTTCATCAGCCACATGGGAACATCGACAATGTGCGGCCATTATGTGTGCCACATCAAAAAGGAGGGCAGATGGGTGATCTACAACGACCATAAAGTGTGCCTGTCGGAAAGGCCTCCTAAGGACTTGGGCTACATCTACTTTTATCACCAGATACCACGCAGCTAGGCGGGAGGCCTGTAGCTGTAGAAACATCCTTTTCTAGCTGGGGAGGTCGGGggagaaacaagaaaaagaaaaagaaatccaCTAGACAGACTAAACAAATGCTAAAGGGAAGACTAAGGACGTGGATCCAGCAAGATATCAGAAGATGGCAGCATCACTCCCATCAAGCCTGGCTCAAGAGGAAAATCCTTTGGTTTCATTGAATGTTCGTTGTGAGTTCTTCATTTGTCAGAGGTAGAGGTAGAGAAGAGAGGTGTGCAGTTTAGTTACTGAAAACGATAGCACAGCATTTTACATAtcagattttgttgttttttggggtgAGGGGGTGCGAGAGTGCTGCAAGCGGGTTTGTTTTCCTAtgccttttatcttttttatagAAATAGACTCTTCATTTTGCAGGTTAACTGTTTGATATTTTCATGAACAGCCGCAGAGTTAAAGTATTATGATCCATAATGGTGCAAGCAAATAAGTAGTAGCCTGATCTGAGGATAGAATGGGTCTTAGACTCTGGGGCGCAGTGTGTGGTCCATTCGGACCGGGTGATGAGACAGTCTCTCTACGGGACGGGATGTAATGGAACTCCGCTGCCACGCCCACACCTCTCCTTAGAAGAGGTGACTGGTGCCAGAAAGGATGGAGTATTTAAATCTGGGCTTTAAATCTGTCTTATTAAAGCACTGTCCCGTTACTGAGATGGCGGATTAAGcggaaatggaagaaaatgccTAAACCAAGACTCTTGCATCAACACACTTCCAGCAGCAGAACCAAAAAGTTGAGCCCAAGGGTTGCATCTTGTTTGGCGTCTGTCTAATGTGCCTTTTGAAATGGCAGACGTGAAGGTGTGAATTGAGGGATGTATTGGTCACCACCACTGAACATTGACAAAACTGGGGAAGTTAAAAGGCAGAACAAAGTAGAACGCGAGGGCTGTCACTTTTCACGCAACCTCGAAACTTCTAGATCTGCGGCCTAAAGCCGAATTCTGATTTACACTATCTGAACAGGTCTGGCATCTGTAGAAACGGGAGTCGATGGTACGGTTGATTTTTTTCCGCGTTGTCGCGCCTGCAGAGAATGAATCTCCCAGAactctgtgctgtagtgtcccaTGGGGCCGTTGCTCTTCCTTGCAGGGTTGCCTGCCATGCTGGAATCGGAGAGATTAGTGTCGCAGGCCATTCTCGCCAGTGGCTCTGCAGAGCAGGGGGTGTGATGCCATGGGATCCTTCATAAAGCCTGTCTTAGTGCCTGGTTTTCTTTATCATATAGAACAAAACCAGCTCAAAACATTTTGATGCAgtatcatttaaaatactttttcttttagtttcataaaagcactttaaatctaaaactaaatatattctttttgtaaaaaaataaaaaaataaatatatatatatatcagagaTCGCATATATGACCGTAACCCCTGCCCCATTCCTTTATAAATGCAAGCATTGTTTCAATTTATGtcaaaacatcacaaaatgCCAATGATGACAATGAAAAATGATTACTGTTAGTGAAATCCGCTTAAGCAGAATTTTTTTGTACAAATCCATGGAAGTGATAGTGCAGATAGTGAGAGTCCAGTTCTTCTAGATACAAACCGAGCAATGCGAACTACGAGACATcacactgtaataataatgacaagTAAAATGGCTTCCTTAGactatatacagtacatgaCTGTAGAAACCAAATTCATAGTGTATAATGCACCAGCTTATCACACTAAACCGATGCAGATGAGTTGCTTCGTGTCGTGAGCTTGTACGGCTTCGCAGGGGCTGCATCTTTTATGCCTGTAATATCAATTCTGATCATGTGAGTTcatcagtatttgtttttcactgacattttcttaaattttgCTTTAATATTCACAGTTGGGTGGAGAAAATAACTTAATCAAGTTTGTTTTTACTAACGAAGTTCAGTACGTTTCTCAGAGACACCATTTCCTTCAGGTTTAAAAGTACCTTTTCATTTAGTGACTGATTTAGTATCTGGTTCTTATTACCTGGATTAGTTCAATACAGTAGTGAAGATCTGCAAATAAAAGACAAACCAAAGGACCCTGGAGAAGTGGAGTTGTGCCCCCTCCCACAGCCTTATTGACCGAGACTGCAAGTCCTGCTCAAATGGTTAGGCTCCGGCCATCACATTGTCTGTGATGACTTGGAGGTTGAATATTATTGAAGATGTTGGCGTTTTAGAATCCCCCGatgttatgcatttaaaaaggtaaatgaaTGTATGGGAGATGACAGAGGGGTGTGCTGTATTGGCCCCATGGTATGTGAAGTGACACCTGTGTCTTCAGCACTGGCTCTCAGAGGTCTGAAGCCGGAGCTTTCGGAAACAGATGTCCGAACATCTGTCAGCGCAAGCAATATCAAAGGGGCAGATGCTCACACTTTCAAGCAAGGATACCTTTCTTTTTTCAACCTCCAGCACTGTGTGCCCCAGACAAACCtgtacagatgtttgttttttgtttaaatgtcctACATAAGCTGTAATGTCTAAGTCACCTGTAAGGTTGTCCCATAAGgttgaaacaatgtatttttattcacttAAAAATATGCAGCCAATGGCTTTCATTTTTGGTTCCagaattaaattgatattactTGTTTTTTCCAGCACACTACGAATGTATTCCTAATGGTGCTCAGAGCTGCAGGCAAACTTTGATGTGCTTTCGATGAAAAGGCTCTACatcaagttttttatttttttgaaaatggaCTGATTTGATTAGAACAAATCAAGAAACATCGCTAACTGGATTCACCAACCATATATGCCGTTGTAACCATTGATAGATATTTTTCTAAAGTTGTATTTGTTACACTGACTTACCATATCATAAAGAAAGTAAATCGCATTTTGGGTTTATGCaaagctttattatttaaaaaaataagggaaCTGGCAAACTTCTTCCCCAGCTGTGATACGGCACAGTCTGAAAGGAGGCGTTGCATGAAATCCCAATGTAGGCGTGAGGTGCAATATATAGATAAGATAACGCCTGGCGCTCTAGTGACTGAACGCACTGTAGAAACTGTATTCTCTGTTAGCtggtactgttttttttttcttctgagtACTAAATAATATACGAATGTCATAGTATTGATTACAGAAGCCAGTTTCTGAACTGGAACGATTTGTGCAGTGATGGCTGCTGTCTGTTGTGTCAAATTAATCCTTTACACACCTTCTGTCAATTGTTCTGAAGCGTGTGACTTCAAATATAGCCGGGCTAGCCCCCTTTATTGTATGTATAGCTGGCTATCAACACCAAATCCTATTCTGCTGTAATTTTCATGTCTCtgaggttttttgtttgttttctggctACCCGCACGGTCTATGCACTTAAACTGGAAATACTGTGGTTACTATGCAAGTCCtactgctgctctctctctgctctctgctctcgCTTTATTAGGATTCCTCTCTCGGTTCTTCACTCAAACTTTCCTTACCAATGTACCGACCGTCTCctgaattttcttttctttttctttctttctcttttactTCTTTGCCTCCTAGTTCTGCTGGTAGCACTGTAGATACTTTGGAGGGCAAAGTGATGCAAGACAGTCTTCTCTCGATCTTGGCATTTCTCTTGCTGGGTTGTAAGTGCTGGGTAACTTATAgcttacctttttgttttacaataccattttgtttgttatattaTCTGCACATGCACTGAAAGTTGACATTTGGTCGTTTAAGTTGTACAAGTTAAGTAGTATAGtgttcattttttctgtttgtttttcatttaatttgatgaaGGAAGGTAAtttcatctgtttttcttttctctttttgtttttgcaaatggCAATGTGCCaatcttgttttattaaaaaaaaaaaaaatcccacaagTAGTCAAATTAAAAGCTAGccagttttatttcttatttattgacAAATGAGTCTTCTACCTGCAAATTTGCCATTAGAAATGCTTTACTACTCAGTGTTTCTCCACACCTTCATTGAAGGCAAGATCCATAGTTAATGCTGTGTGTCCTAAATACTCTGTGTCAgcagtattatttaaaaaaatcaatcgGGTAAAACCTGAAAAAACGATGGCACAACTTAACCCATGGTGCTGCTTTCTTAT

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0070536 protein K63-linked deubiquitination biological_process
GO:0008283 cell population proliferation biological_process
GO:0010506 regulation of autophagy biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0050821 protein stabilization biological_process
GO:0004197 cysteine-type endopeptidase activity molecular_function
GO:0004221 obsolete ubiquitin thiolesterase activity molecular_function
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function
GO:0008242 omega peptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0043130 ubiquitin binding molecular_function

KEGG:

id description
K11836 USP5_13, UBP14; ubiquitin carboxyl-terminal hydrolase 5/13

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71208 lncRNA downstream 156255 37906405 ~ 37907571 (-) False AMCG00009437
TU71165 lncRNA downstream 329638 37636705 ~ 37734188 (-) True G56927
TU71067 lncRNA downstream 546172 37515969 ~ 37517654 (-) True G56861
TU71046 lncRNA downstream 594518 37467273 ~ 37469308 (-) False AMCG00009417
TU71032 lncRNA downstream 641305 37418414 ~ 37422521 (-) True G56831
TU71277 lncRNA upstream 30304 38118428 ~ 38118843 (-) True G57013
TU71279 lncRNA upstream 37025 38125149 ~ 38125363 (-) True G57015
TU71280 lncRNA upstream 37857 38125981 ~ 38127340 (-) True G57016
TU71281 lncRNA upstream 39344 38127468 ~ 38127678 (-) True G57017
TU71282 lncRNA upstream 40860 38128984 ~ 38129202 (-) True G57018
AMCG00009439 mRNA downstream 109771 37942071 ~ 37954055 (-) True AMCG00009439
AMCG00009440 mRNA downstream 130181 37928306 ~ 37933645 (-) True AMCG00009440
AMCG00009437 mRNA downstream 154858 37889502 ~ 37908968 (-) True AMCG00009437
AMCG00009435 mRNA downstream 198588 37859097 ~ 37865238 (-) True AMCG00009435
AMCG00009436 mRNA downstream 260979 37772580 ~ 37802847 (-) True AMCG00009436
AMCG00009447 mRNA upstream 1232 38089356 ~ 38092156 (-) True AMCG00009447
AMCG00009448 mRNA upstream 6849 38094973 ~ 38105793 (-) True AMCG00009448
AMCG00009446 mRNA upstream 45959 38134083 ~ 38146947 (-) True AMCG00009446
AMCG00009445 mRNA upstream 67601 38155725 ~ 38176524 (-) True AMCG00009445
AMCG00009451 mRNA upstream 155083 38243207 ~ 38259816 (-) True AMCG00009451
TU70990 other downstream 843750 37215960 ~ 37220076 (-) True G56800
TU70712 other downstream 2191229 35872123 ~ 35872597 (-) True G56568
TU70685 other downstream 2524016 35538887 ~ 35539810 (-) False G56546
TU71449 other upstream 492161 38580285 ~ 38582820 (-) True G57155
TU71520 other upstream 747192 38835316 ~ 38837564 (-) False AMCG00009472
TU71924 other upstream 2060601 40148725 ~ 40157471 (-) False AMCG00009521
TU72548 other upstream 4581003 42669127 ~ 42673707 (-) True G58025
TU72928 other upstream 5394297 43482421 ~ 43945297 (-) True G58333

Expression Profile