RNA id: AMCG00009448


Basic Information

Item Value
RNA id AMCG00009448
length 2030
RNA type mRNA
GC content 0.48
exon number 11
gene id AMCG00009448
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 38094973 ~ 38105793 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGTGGCGGCTGTCGGCCCAGGCGAGCGTCTCGGCGGCGGGGTGCGGGTCCGGGCGAGCTGTGCGGGCTTTCCGCTGCTGTGGGTCCGTGTGCGGTGTGGCTGCGGAGGCGCTGCGCAGTGGAGAGGAAACCGGCAGACAGCTGATCCGCGGCGGGCAGGGCGAGGGCCGGAGACTGATTGTGGGGAACCTCTCCATTGCAGACGAGGTTGGCGCCCTGGTGTTTGACATTGGGTCCTACACAGTCAGAGCTGGCTATGCCGGGGAGGACTGTCCAAAGGCGGATTTCCCCACCGTGATCGGGGTGGTGCTCGATAGGGAGGATGGGAGCACGCCCATGGAGACGGATGGGGACAAGGGCAAGCAGAGTGGCACCTCCTACTACATCGACACCAACCAGCTCAGGGTGCCCCGGGAGAGCATGGAGGTCATGTCCCCTCTAAAAAACGGCATGATTGAGGACTGGGACAGTTTCCAAGCCATCCTCGACCACACCTACAAGATGCACATCAAATCGGAAGCTAGCCTGCACCCAGTCCTCATGTCTGAAGCTCCGAGAGAGAAGCTGACGGAGCTGATGTTCGAGCATTACAACATCCCGGCCTTCTTCCTATGCAAAACAGCCGTCCTGTCATCTCTGTTCTCTGTTTTCTTCCAGACTGTGATCCAGGATTTCCAGGCTTCTGTGCTACAGGTCTCCGACTCTCCTTATGATGAACAGGTCGCTGCGCAGATGCCCACTGTCCATTATGAGCTGCCCAACGGGTACAACTGTGACTTCGGCGCCGAGCGGCTGAAGATACCGGAGGGACTGTTTGATCCCTCCAACGCCAAGggccTATCGGGGAACACCATGCTGGGGGTGGGTCATGTGGTGACGACCAGCGTTGGAATGTGTGACATCGACATCAGGCCTggcCTGTACGGTAGTGTTGTTGTGACTGGAGGAAACACGCTGATCCAGGGCTTCACAGACCGTCTCAACAGAGAACTGTCCCAGAAAACCCCTCCTAGTATGAGACTGAAGCTGATCGCCAACAACACCACAGTGGAGCGCCGGTTTAGCTCCTGGATCGGTGGCTCCATCTTAGCCTCCCTGGGTACTTTCCAGCAGATGTGGATTTCCAAGCAGGAGTACGAGGAGGGTGGAAAACAGTGTGTGGACAGGAAGTGCCCGTAATGGACAGACTACCAACTCTCTGCCTTTAGAATTCAAAACAACTCGGAACTAGTGTAGCCTTTTACAGTGTACTCAGGAACACCAAGGACATTTGCaatttttgtagatttttttttttttttttttttttatatatatatatatatactgtataaatatatgtaaaatggcTTCCTTTGTACTTTTATGTAGAGAACATTTTGTGGTGAACATACTGTTCAATCAAACCTACTCTTAATAGTGCTTTGCTATTTTCCTACTTCAAAGACAAACCgctgttaaaaacaaagttcTATtcaatttttccattttgttatttttaaatagaactTTTTTCCAAGCCTATTTTGATACCAAACCGTTTGTGCAGATagaattcaaatatatacaagcagtttggaaataaatgggatttttaattaaaatttgatttatCGTTCTGAAGAGATGCATCTCCTTTGTTGGCTTGTTTTTGGCTGAGGTGTGTTGTTAGTGCCGACACCTTTTTATTTGGAAGGAAAACATCCTAAAATGAATTTTGTCAGAGGTGACATATGAATCGCTTCTCCTGAGGCTGAGTACTGCAATGATGGGAGCAAATTAGCCACTGCAGATATCTGACTTCTGTCCAcagcttgttttaaaatgtggcGGGTGCAAGCGTCAACTGCTGCCCTTTGgaaataaaatccttttttcTACCAGTGTGAATGTGGGCTTCTAAAAGTGTTTAACTGTATAATTAAGTGTTGATTtgttccacacacacaaaaatggtTGAGAAGAGACTAAGCTGGatgaaaaccatttaaaacactgAGGGAAATTAAAGCATCAGCATTCCAAAA

Function

GO: NA

KEGG:

id description
K11652 ACTL6B; actin-like protein 6B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71208 lncRNA downstream 187402 37906405 ~ 37907571 (-) False AMCG00009437
TU71165 lncRNA downstream 360785 37636705 ~ 37734188 (-) True G56927
TU71067 lncRNA downstream 577319 37515969 ~ 37517654 (-) True G56861
TU71046 lncRNA downstream 625665 37467273 ~ 37469308 (-) False AMCG00009417
TU71032 lncRNA downstream 672452 37418414 ~ 37422521 (-) True G56831
TU71277 lncRNA upstream 12635 38118428 ~ 38118843 (-) True G57013
TU71279 lncRNA upstream 19356 38125149 ~ 38125363 (-) True G57015
TU71280 lncRNA upstream 20188 38125981 ~ 38127340 (-) True G57016
TU71281 lncRNA upstream 21675 38127468 ~ 38127678 (-) True G57017
TU71282 lncRNA upstream 23191 38128984 ~ 38129202 (-) True G57018
AMCG00009447 mRNA downstream 2817 38089356 ~ 38092156 (-) True AMCG00009447
AMCG00009441 mRNA downstream 6849 38063826 ~ 38088124 (-) True AMCG00009441
AMCG00009439 mRNA downstream 140918 37942071 ~ 37954055 (-) True AMCG00009439
AMCG00009440 mRNA downstream 161328 37928306 ~ 37933645 (-) True AMCG00009440
AMCG00009437 mRNA downstream 186005 37889502 ~ 37908968 (-) True AMCG00009437
AMCG00009446 mRNA upstream 28290 38134083 ~ 38146947 (-) True AMCG00009446
AMCG00009445 mRNA upstream 49932 38155725 ~ 38176524 (-) True AMCG00009445
AMCG00009451 mRNA upstream 137414 38243207 ~ 38259816 (-) True AMCG00009451
AMCG00009452 mRNA upstream 160406 38266199 ~ 38271710 (-) True AMCG00009452
AMCG00009453 mRNA upstream 173458 38279251 ~ 38281530 (-) True AMCG00009453
TU70990 other downstream 874897 37215960 ~ 37220076 (-) True G56800
TU70712 other downstream 2222376 35872123 ~ 35872597 (-) True G56568
TU70685 other downstream 2555163 35538887 ~ 35539810 (-) False G56546
TU71449 other upstream 474492 38580285 ~ 38582820 (-) True G57155
TU71520 other upstream 729523 38835316 ~ 38837564 (-) False AMCG00009472
TU71924 other upstream 2042932 40148725 ~ 40157471 (-) False AMCG00009521
TU72548 other upstream 4563334 42669127 ~ 42673707 (-) True G58025
TU72928 other upstream 5376628 43482421 ~ 43945297 (-) True G58333

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000340_03662829_03666784.mRNA True 1020 mRNA 0.47 10 CI01000340 3662760 ~ 3666784 (+)