RNA id: AMCG00009449


Basic Information

Item Value
RNA id AMCG00009449
length 3951
RNA type mRNA
GC content 0.42
exon number 15
gene id AMCG00009449
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 38194847 ~ 38206084 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TACCACTACAGTTCACTGCAGCTGTTCGCAGAAAGCGCTTTTCCGCGCGTGTCTGCGGGTGAGCAGCTCTGCGTGTCTCTGTTGTTTTGCGGCGAAGATGCGTTTGCACAACATTAACACCGCGCCGCACTGTGTTATACCTGTGCGGTGAAAGAAACGCGCCGAGCCGGGAGTCGCCGCATCGCATCGGATGTTTGCAGGACTTCGGCCTTTGAAGTTTGAGACACGCCGGGCTGTTGGAAGTGTGTGACTGCAGGGCAGCGGGGTCGGGCAGCACTGAAGGTTGCGGGTGAAACAGCTGCCGCCACCTCTGGCTTTTGGACCCCACTCACGCTTGAATGGTGGCATCCGCAAGCCCAGCAGACACATAGTAGCACACCTTGGCTTGGGTGGCTACAAAGTTGATATCCGTGTGTTCCTGTATAAAACGATGGTTCCCTCACAAGCACCCCAGGCTGGGAGGACCAGAAAGGCAGGGAAATAATGCACTAGCGCAGAGACCGGGAGCTGCATGTGTGGAAATCCCAGAAGATGCCAGCTGTTGCTTCGGTGCCGAATAAGACGTGTTGGGTTGTCTTTGGATGTGCTGTATATTGATTGCAATATAGCAGAATGAGCTCCCAGAGAAACGGGTTTCAGAAGGACATGTATATCCTGTCAGTGGATGTGGGCACGACGTCTATCCGAGGCCATGTGTACGACAGGGAGGCACAGATTAAAGGATCGAGCACCAAACCGATCAGTGTTCTGTACCCCAACCCTGGCTGGGTGGAGATGGACCCTGAGAAGCTTTGGCAGCAGTTTATTGCAGTGGTCAAAGGAGCTGTACATGGTTGGAGAACAGGAAAACCATTTCACAACTTCATCAGCTGGCAGGACCTCAGAGCCTCTGAACTTGTCAAAACATGGAACAACTCTTTTGTATTGAAGGCCGTCCACGGgacaacaaaaatgttacacTTCATTACCAGGCAGAAACGTTTCCTGGCTGCAAGTCTGATTGTCTTTTCCACACAGCATGTCACATTCCGCCTCGCCTGGGCCCTGGAGAACATAAAAGAGGTAAAAAAAGCTGCTGAAGAGGGAAATTGCTGCTTTGGGACAATTGACACTTGGCTGCTGTACAAACTCACTAAAGgtGCTGTTCATGCTACAGATTATTCCAATGCAAGTACCACAGGGATCTATGATTCGTATCAGATGTGCTGGAGCGGCTTTCTTTGCTCCCTCGTCTCTCTGCCAATCTCTATATTCCCTACGGTGGAGAACACGGGTCACAACTTCGGTTTCACAGACTCCAGCATCTTTGGAATACCAATACCGATCATGTCTGTCGTCGCGGATCAACAGGCCGCGATGTTCGGGGAATGCTGCTTTGACATAGGGGATGTGAAGATCACAATGGGAACAGGCACATTCATGGACATCAACACCGGAAACAAACCTCATACGTCTATGTCTGGACTGTATCCACTCGTGGGCTGGAAAATGGGCGCGGACCTTGTCTTTTTAGCTGAAGGCAATGCCGCAGACACTGGCACAGCCATCAAATGGGCACAAGAACTGGACCTGTTCACTGAAGAAACTGAGACAGAGGTGATGGCTAACAGTGTGGAAGATGCAGATGGGGTCTGTTTTGTGCCGTCCTTCAGTGGTTTACAGGCTCCCGTGAACGACCCCAAAGCCTGCGCTGCGTTCATGGGTTTGAAACCCTCGACGACTAAAAGCCACTTAGTGCGAGCGATCCTGGAGTCCGTAGCGTTCAGgAACAAGCAGCTGTATGATATAATGCTTCAAGAGATGCACATTCCCATCACAAATATAAgGCCCTGTCACTTCGACATGTCAAGTCTCGGGGCAGCGTACATCGCGGGCCTGGGAGTGGGTTTCTGGAAGAGcaaagaagaaataaagcaCCTGAGATGCACAGAGAAGGTCTTCTTCCCACAGAATATCTGGAAAGATTATAAACCCATCATGGAGAACTGGGAGAAAGCTCTGATGCGCTCCATGCACTGGTACGGCAAGCGATAGCTACTGATCGgtctgatactgatactgaatCATCCACTTGAATGTCAATGCACAAGCTAGTATAACCTCAGAATTCAAGCACTGCTGCAAATACACTGCTGATCACAGCATTCATGACTTCTAGAAGATAAGATCAGCAACAAATTGTTTCTAGTCgatagtttttagtttttgttatttttaaaatactaaagCACAGTTAGCCAAAGCCATAGATCTTTAACCAGTTCAAaagatttaaattttttaatgattacatATTATTTCTTGTGAAATGTATCATTAATCTTTCATAATGTGCCTGCTAAGGAGGGCTGAAGAATTCTCTGATGCATGATTTTGCAAAGCCAATATATAAAGTGTAACTCTATAGTATATAAAAACGAATTTCCCACTCTCGAAGTTTTTGAATGTGACTAGAAGGTAAATGTGGCCTTAATTAATATCAGACCCAAATATTATTCCCCCAAGACGAGGTTTaacttcttaaaatgtaatttatttttcttggtgtATGTCCTCTTGCTATGCTGTTATAACGACAGACTAGGTAGATATATGGTACTTCTATATTTAGTTTATTCACGGATGTCTGATCTTGGCTAATGCTGTCTACATTATGCATGTTAATGGGATTGGTATGAAGTAAGGATATAGCTGTCTATAATGAACACAATATATAATCTTACTGACAGAATTCTtccttgatttaatttaaagcacTGTGATAGGACAGGATCCTGGAAACTATAGTGATGACTATGGAATGATAGGAGATTGGTTGTTGCTGAACTGATCAAAAGCCAAACGcgttttgtttaaattacttttgtagTGGTAATGGTTTGCAATCTCGTAACATCGTCGGAACAATCCAGGCCTGCACTCTTCAATAATTACATACCTCTTTTTGCTTAATTTCTCTTCTGGAGGACATAGTCTTATGTCTATTACGTAAACCAGCTCTTTCTTAACCTATGATCTGGAACACACTTTGCCGTTTTCTGTACTTGGTACTACAGAGATAACTGTTAGATACTGATAAAGTGTAATGTCTGAATAAACTCTGCTTAGTAGTGAGAACATTTTCTCAGATTGGAAAAATGTACCTATTTCAATAGGTAGTGTGTGTCCAACAGGTTGTGTAacctataattatattttgctaATGAAATATGGGTAATGGCCATGCACACATTTATTCTGTATACACCGTGTCTGCTGGCTTGTTGTTTGTACTCGTAATGTCTGCTGCAGATGTGTaaaagtgtaaattaaaaaggttaaatCATGCATTTATTGCTAATTATTATACTTTAACCTGTATTTTCCCTAGTGGGCTTATTAAACAAATTCAaggttcatatttttttaaacacaacataGATTGTTTACAGAACTTTTTCAAATACCTTTACTGTTCAGAAAGAAATTGTAAAGATAGGAAGCCATTGtgaatattgtaaaaataaatggaatattCAAACAttgccaaatatatatttatactgtatatttactgagaaacaaaatcaaatcagttttattaactgttttttttaattgaactgtaCTCTGTTAGTCGTCCATTGTATTATTAAGGATGGTCTTACATGCAATTTTATAGTATTTCATGTTTATGGAGAATGTAATTCCATATaagaaatgcattcatattaGAAATATGTATGTGATGTTTTCAGCCTGCATACAGGTGAAACATTTGAGTATCTGAAATGGTCTGTAATCCAGAGTTGTGAAAACGTCATATGACTGGAATTTACTAATTCTCTACATGCATTGAAAGTGTAAATTTTTACGTGGAAAATAACCATAAAACAATCTGTACAAGATTAAAAgtgttatgttttaatgtattaaaaagtggGGTGAGTGTATCATTTGATGAGGAATAAT

Function

GO: NA

KEGG:

id description
K19583 GK5; putative glycerol kinase 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71255 lncRNA upstream 60881 38130082 ~ 38133966 (+) True G56995
TU71241 lncRNA upstream 126694 38063790 ~ 38068153 (+) True G56982
TU71111 lncRNA upstream 578151 37611255 ~ 37616696 (+) True AMCG00009428
TU71098 lncRNA upstream 641706 37548313 ~ 37553141 (+) False AMCG00009429
TU71031 lncRNA upstream 731342 37460042 ~ 37463505 (+) True AMCG00009415
TU71462 lncRNA downstream 421835 38627919 ~ 38628135 (+) True G57161
TU71465 lncRNA downstream 427013 38633097 ~ 38633351 (+) True G57164
TU71480 lncRNA downstream 551296 38757380 ~ 38834945 (+) True G57175
TU71626 lncRNA downstream 1097253 39303337 ~ 39306230 (+) True G57286
TU71627 lncRNA downstream 1100404 39306488 ~ 39306774 (+) True G57287
AMCG00009442 mRNA upstream 43901 38147975 ~ 38150946 (+) True AMCG00009442
AMCG00009443 mRNA upstream 65443 38125308 ~ 38129404 (+) True AMCG00009443
AMCG00009444 mRNA upstream 100724 38092400 ~ 38094123 (+) True AMCG00009444
AMCG00009438 mRNA upstream 135574 38031385 ~ 38059273 (+) True AMCG00009438
AMCG00009427 mRNA upstream 573457 37619502 ~ 37621390 (+) True AMCG00009427
AMCG00009450 mRNA downstream 900 38206984 ~ 38241384 (+) True AMCG00009450
AMCG00009457 mRNA downstream 127964 38334048 ~ 38354970 (+) True AMCG00009457
AMCG00009456 mRNA downstream 261183 38467267 ~ 38474039 (+) True AMCG00009456
AMCG00009462 mRNA downstream 275029 38481113 ~ 38511022 (+) True AMCG00009462
AMCG00009463 mRNA downstream 335905 38541989 ~ 38583431 (+) True AMCG00009463
TU71113 other upstream 578564 37610343 ~ 37616283 (+) False AMCG00009428
TU70945 other upstream 827176 37360101 ~ 37367671 (+) True AMCG00009405
TU70668 other upstream 2805520 35388914 ~ 35389327 (+) True G56536
TU70453 other upstream 4163402 34000796 ~ 34031445 (+) True G56368
TU71381 other downstream 236171 38442255 ~ 38457592 (+) True G57105
TU71670 other downstream 1228816 39434900 ~ 39436995 (+) True AMCG00009480
TU71802 other downstream 1741922 39948006 ~ 39949200 (+) True G57430
TU71881 other downstream 1896299 40102383 ~ 40104948 (+) False AMCG00009516
TU72035 other downstream 2784718 40990802 ~ 40994659 (+) True G57604

Expression Profile