RNA id: AMCG00009452


Basic Information

Item Value
RNA id AMCG00009452
length 1563
RNA type mRNA
GC content 0.52
exon number 5
gene id AMCG00009452
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 38266199 ~ 38271710 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGTGACATGGGAGGACTGGACAATCTGATCGCCAACACTGCTTACCTGCAAGCCAGGAAAAGTGGTGATGGAGACGGCAAAGAGATGCAGAAGAGGCGCAGGAGCTTGGCTTTGCCCAAGACTGACCAGTGTGCAGAGATACGGCAGAACATGGACAAGAACTTTGAGAGCCTGTGTGAACAGCAACCAATAGGGAAGAAGCTCTTCCGCCAGTTTGCAGCAACCTTGCCCGTATACCAGGTGGCTGTCGACTTCCTGGACGAGCTGAACAACTGGGACTTGGCTGAGAGCAATTCCAAAGACAACCTCCGCCAGAACATCAGCACCAGTTTCCTTAAGTCGGACTCCAAAAACTTCCTGTCCTTCCTGAGCCCTGGGTTGGCCGATAAGTGTCAAAATGTCACAGAGAAAGACTTTGAGGAAGTCACCACAAAGGCCAAAGAGGAGACAAGGAGCTTCCTTAAGGGAAAGGCCTTTGAGGAGTACCAGAACAGCTTCTTCTTTGAGAAGTTCCTGCAGTGGAAAGTATTTGAGCGGCAGCCTATCACTGAAAAATACTTCTACGAATTTAGGATTCTGGGAAAAGGAGGATTCGGAGAGGTCTGCGCCATTCAAGTCAAAAACACCGGGCAGATGTACGCCTGTAAGAAACTGGACAAGAAGCggttaaagaagaaaaagggcGAGAAGATGGCGCTGCTGGAGAAGGAGATCTTGGAGAAAGTCAACAGCCCTTTCATCGTCAAACTGGCCTACGCGTACGAGAGCAAGTCCCACCTGTGTCTGGTGATAAGTCTCATGAATGGCGGGGACCTGAAGTACCACATCTACAACATCGGGGAGAGGGGTATAGAGATGAACCGTGCCATCTACTACACTGCCCAGATCACCTGCGGGATGTTGCACCTGCACTCCATCAACATCGTGTACCGGGACATGAAACCCGAGAACGTGCTCTTGGACGACAATGGACAGTGCCGATTATCTGATTTAGGATTGGCAGTGGAAGTCAAGGAAGGCAAAACGATCAGCCAAAAGGCTGGCACCAACGGTTATATGGCTCCTGAGATCCTGAAGGAGGAGACCTACACCTACTCAGTGGACTGGTTTGCTCTGGGCTGCAGTATCTTTGAGATGGTGTCGGGTAGAACTCCTTTTAAGGATTACAAGGAGAAAGTCAACAAGGATGAAGTGAAGAGGCGGACGCTGGAGGATGAGGTGAAGTTTGAACATCCCAAGTTTGATGAGCCCACCAAAGACATATGGGCGCAACGTCTAGAAGCTGGTCTTATTGACCCTCCCTTCGTGCCAGACCCCTCTGTCGTGTACGCCAAGGAGGTCGGCGACATCGACGATTTCTCGGAGGTGCGAGGGATCGAGTTCGATGACAGGGATAAGAAATACTTCAAGAGGTTTGCCACTGGGGCCGTGCCCATCCCCTGGCAGGAAGAGATGATAGAGACGGGACTGTTCGAGGAGCTCAGCGACCCCAACCGAAAGGAGTCCGTATCTGGTGGAGGGTCGGGGGAATCCAAGTCTGGCGTTTGTGCCCTGCTgtga

Function

GO:

id name namespace
GO:0007601 visual perception biological_process
GO:0007603 phototransduction, visible light biological_process
GO:0006468 protein phosphorylation biological_process
GO:0009881 photoreceptor activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0050254 rhodopsin kinase activity molecular_function

KEGG:

id description
K00909 GRK1_7; rhodopsin kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71275 lncRNA downstream 132233 38129295 ~ 38133966 (-) True G57011
TU71274 lncRNA downstream 132233 38130081 ~ 38133966 (-) False G57011
TU71282 lncRNA downstream 136997 38128984 ~ 38129202 (-) True G57018
TU71281 lncRNA downstream 138521 38127468 ~ 38127678 (-) True G57017
TU71280 lncRNA downstream 138859 38125981 ~ 38127340 (-) True G57016
TU71435 lncRNA upstream 229408 38501118 ~ 38503129 (-) True G57143
TU71466 lncRNA upstream 361402 38633112 ~ 38633397 (-) True G57165
TU71506 lncRNA upstream 500716 38772426 ~ 38773951 (-) True G57194
TU71580 lncRNA upstream 809711 39081421 ~ 39083424 (-) True G57244
TU71700 lncRNA upstream 1308901 39580611 ~ 39588074 (-) True G57351
AMCG00009451 mRNA downstream 6383 38243207 ~ 38259816 (-) True AMCG00009451
AMCG00009445 mRNA downstream 89675 38155725 ~ 38176524 (-) True AMCG00009445
AMCG00009446 mRNA downstream 119252 38134083 ~ 38146947 (-) True AMCG00009446
AMCG00009448 mRNA downstream 160406 38094973 ~ 38105793 (-) True AMCG00009448
AMCG00009447 mRNA downstream 174043 38089356 ~ 38092156 (-) True AMCG00009447
AMCG00009453 mRNA upstream 7541 38279251 ~ 38281530 (-) True AMCG00009453
AMCG00009454 mRNA upstream 19187 38290897 ~ 38297834 (-) True AMCG00009454
AMCG00009455 mRNA upstream 46260 38317970 ~ 38319433 (-) True AMCG00009455
AMCG00009458 mRNA upstream 86210 38357920 ~ 38367533 (-) True AMCG00009458
AMCG00009460 mRNA upstream 107102 38378812 ~ 38414321 (-) True AMCG00009460
TU70990 other downstream 1046123 37215960 ~ 37220076 (-) True G56800
TU70712 other downstream 2393602 35872123 ~ 35872597 (-) True G56568
TU70685 other downstream 2726389 35538887 ~ 35539810 (-) False G56546
TU71449 other upstream 308575 38580285 ~ 38582820 (-) True G57155
TU71520 other upstream 563606 38835316 ~ 38837564 (-) False AMCG00009472
TU71924 other upstream 1877015 40148725 ~ 40157471 (-) False AMCG00009521
TU72548 other upstream 4397417 42669127 ~ 42673707 (-) True G58025
TU72928 other upstream 5210711 43482421 ~ 43945297 (-) True G58333

Expression Profile