RNA id: AMCG00009460


Basic Information

Item Value
RNA id AMCG00009460
length 2393
RNA type mRNA
GC content 0.46
exon number 24
gene id AMCG00009460
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 38378812 ~ 38414321 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGAAGCGAAAAACCTAGTTCCATGCCCTGGACCGAACCGGATGAGAGACTGTTTCTGCACAGTAAGCCTTGACCAAGAAGAAGTCTTCCGtacaaaagtatttgaaaaaagTTTAAGccCCTTTTACGGAGAGGACTTTTACTTTGAAATTCCACGACCTTTTCAGTATTTATCTTTCTATGTATATGCGAAGAGTGTTTTTCAAAGGGATTTACCAGTAGgGAAGGTAGCAATAAGAAAAGATGATCTGTGCAAATTCAGTGGGAAAGAACACTGGTTTAGTTTACAGCCTGTGGACCCCAACTCTGAAGTACAGGGCAAGGTTCACCTGGAGATGAAGTTGAATGAATTGATCACGGATAACGGGTCTGTTTGCCAGCAGCTCGTGGTCCGaatAATTGAATGCCAGGGATTGCCTCTTGTAAACGGGCAGAGCTGTGACGCATATGCAACCGTTTCTCTGATTGGACCGGCAAGGTCAGACCAGAAGAAAACCAAGGTGAAGAAGAAAACCAGTAACCCCCAGTTTGAGGAAACATTCTATTTTGAGGTTACAAGATCCAGTAGTTacacaaaaaaatcacagtttcaagtagaagaagaagacatTGAAAAGCTTGAAATCAAAGTGGATCTGTGGAACAATGGGAACCTGGTGCAGGACGTTTTCCTCGGGGAGACGCGGGTGTCTGTGAAGATTTTACGAAACGACTCGTCCCATCGAGCTTGGTATTTGTTACAACCGAAGGACAATGGCAACAAGACCTCTAAAACCGATGACCTTGGGTCTTTGAGATTAAATGTAACGTACACAGAGGATAACGTCCTCCCATCGATTTACTACATTTCCCTGAGGGATCTGCTGCTCAAATCGCCAGACGTTAAGCCTATTTCTGCCTCTGCTGCTCACATCCTGGGTGACATCTGTCGAGAGAGATACGAGGCCGTCTTGCCCGTTGTGCGGCTCCTCTTGCATCACAATAGACTGGTTCCCTTCGTCTCTGCCATCGCTGCCCTAGAGCTGGAGCAAACGCAGGAGGCCAACACGATATTCAGAGGGAATTCCTTGGCCACTCGGTGCATTGATGACACGATGAAGATTGTGGGAAAGAGCTACTTGACAatcTGTGACTCCAACAAAACCTGTGAAATCGATCCTGTCAGACTGAAAGAAGGTGACAATGTGGAAGTGAACAAGGAGAATCTGCACCAGTACGTACAGAAGGTGTTCAACTCCATCATCCAGTCCAGTATGAGCTGCCCCACCCTCATGTGCGATGTCTTCAACTCTCTGAGGCAACTCGCCACCAAACGATTTCCAGATGACCCCCATGTCCAGTACTCTGCCGTCAGCAGTTTTGTGTTTCTGCGCTTCTTTGCGGTCGCTGTGTTATCTCCTCACAGCTTCCATCTGCGCGCTCATCATCCGgaCGCAGACGTGTCCCGAACCTTGACTCTCATTTCCAAAACTATCCAGACACTAGGAAGCTGGGGCAGCTTATCCAAAAATAAACTGTCGAGTTTTAAAGAGTCGTACATGTATGATTTCTTCAAATCATTCCAAGAAGAGAAATGTATAGAAGAAGTAAAAAAGTTTTTAGATGAAATTTCCTCAAATGAAAGTAAAGAGTCGAGTGGTGTTGAAGAATCGGTCGTCCACAAAGAAGGGGAAGTGCATAAAAGAGCTCAGGGAAGAAAACGAATCGGCAAGAAGAACTTCAAGAAGAGATGGCTGCGTCTGTCCACTAGAGAGCTGTCTTACCACAAGGCCAAAGGTATActaCGCTGCAGTGGTGATAAGGTTGGGGCGATGGGGAAAGACGCCCTTTGCATCATTCCAATAAAAAACATCTTGGCTGTCGAGAAGCTTGAAGAGAGTGCCTTCAACAGGAAAAATGTAATTCATACTGAGAAGCCTCTCTACGTCCAGGCGAATAACTGTGTGGAGGCCAACGAGTGGATTGAGATTCTCAGCAGGGTTAGCCGTTGTAATCAGGGAAGGCTGAATTCATACCATCCTTCAGCTTATCTCTGTGGAAACTGGCTGTGCTGCAAGGCCACATCTGAGACCCAGCCTGGCTGCAAGCCATGCACTGCtaCCATGCCAGCAAATATTCAGCTTGACATCGACTGTGACCGTGAAATAGAGAGGATCTTCTCCTTATTTGTGTCAAACGCGCACAAGCTGCAGAAATTGGAAGAGGCTTGTGCAAGCATTGCAGTGTACCAAGGCCCCCAGAAAGAACAAGATGACTACTCCCACTTCACCATCCAGGATCCCAGGGTGACCttcaaaacaattaatcaaatccGTGATATTTCGGAGCAGCTGCGGGAGCATCACGAGAAGTTCCAAAAGAAAAGGTCGACAAGTGCTAAATATGGCAGCGAG

Function

GO: NA

KEGG:

id description
K08053 RASA2, GAP1M; Ras GTPase-activating protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71275 lncRNA downstream 244846 38129295 ~ 38133966 (-) True G57011
TU71274 lncRNA downstream 244846 38130081 ~ 38133966 (-) False G57011
TU71282 lncRNA downstream 249610 38128984 ~ 38129202 (-) True G57018
TU71281 lncRNA downstream 251134 38127468 ~ 38127678 (-) True G57017
TU71280 lncRNA downstream 251472 38125981 ~ 38127340 (-) True G57016
TU71435 lncRNA upstream 86797 38501118 ~ 38503129 (-) True G57143
TU71466 lncRNA upstream 218791 38633112 ~ 38633397 (-) True G57165
TU71506 lncRNA upstream 358105 38772426 ~ 38773951 (-) True G57194
TU71580 lncRNA upstream 667100 39081421 ~ 39083424 (-) True G57244
TU71700 lncRNA upstream 1166290 39580611 ~ 39588074 (-) True G57351
AMCG00009458 mRNA downstream 11279 38357920 ~ 38367533 (-) True AMCG00009458
AMCG00009455 mRNA downstream 59379 38317970 ~ 38319433 (-) True AMCG00009455
AMCG00009454 mRNA downstream 80978 38290897 ~ 38297834 (-) True AMCG00009454
AMCG00009453 mRNA downstream 97282 38279251 ~ 38281530 (-) True AMCG00009453
AMCG00009452 mRNA downstream 107102 38266199 ~ 38271710 (-) True AMCG00009452
AMCG00009461 mRNA upstream 18254 38432575 ~ 38436609 (-) True AMCG00009461
AMCG00009459 mRNA upstream 59863 38474184 ~ 38481035 (-) True AMCG00009459
AMCG00009467 mRNA upstream 340529 38754850 ~ 38762930 (-) True AMCG00009467
AMCG00009471 mRNA upstream 361237 38775558 ~ 38810559 (-) True AMCG00009471
AMCG00009470 mRNA upstream 402874 38817195 ~ 38820080 (-) True AMCG00009470
TU70990 other downstream 1158736 37215960 ~ 37220076 (-) True G56800
TU70712 other downstream 2506215 35872123 ~ 35872597 (-) True G56568
TU70685 other downstream 2839002 35538887 ~ 35539810 (-) False G56546
TU71449 other upstream 165964 38580285 ~ 38582820 (-) True G57155
TU71520 other upstream 420995 38835316 ~ 38837564 (-) False AMCG00009472
TU71924 other upstream 1734404 40148725 ~ 40157471 (-) False AMCG00009521
TU72548 other upstream 4254806 42669127 ~ 42673707 (-) True G58025
TU72928 other upstream 5068100 43482421 ~ 43945297 (-) True G58333

Expression Profile