RNA id: AMCG00009461


Basic Information

Item Value
RNA id AMCG00009461
length 4035
RNA type mRNA
GC content 0.52
exon number 1
gene id AMCG00009461
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 38432575 ~ 38436609 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACAGTCATGTCCCCAGTGACGGAGGCCTTGATGGACAGCTCCCACTTCCAGTCAGTCCTCGGCTGCTTGAACGACCAGCGCACACAGGGTATGTTCTGCGACGTTACCATAGTAGTGGAAGACATCAAGTTCAAGGCCCACAAGAACGTGCTCGCCGCATCCAGCTTCTACTTCAAAAACGCCTTTTCCTCCCAAGAATTTTGGGTCTCGGGGCAAGTTCTGGAGCTGCCTGACTTCAAGTCAGAGGTCTTCGCCGGGATCCTGAATTTCATCTACAGCGCAAAGTTGGCCTCCACAGTTATAGAAGATGTGAAGTCGTTTGTGGCAGCTGGGAAGAAATTAGGCATCCCCTTTCTGGAGAACCTAGCTGAGCTTGAGCGGCGTTCCTCCAGTGTTTCACAGATACCATCTCAACCTCCTCCTTTCCAGACCGCGAGCCCAGACAGCACTCTTCTCCCCGCAGACTCACACTCCTTAAAAAGGGAGACCCCGAACAGCTCCTGCGATCCCAGGACTGAAGAGACAGAGTGCACAAGTGGGCCGAGGATCACCAATGCCTTTTCTATCATTGAGGCAGGACCTAACAATGACTTGTTTTCTCCCCTCGACCTTAGGGCAAGCACAAAGAGATCTCAGGAGCCGGAACAGTTGCCCGTTGGGTGTCCTGGCCAAAACGCTGCTGTGCCAGACAGCGAACAGACCCACACTTTGTCAGAGCACTCGTACGCAGTAAATCAGTCACGCAAAACCACAGAGCAGGATGAACTGGGAGCGAACAACGGAAGGAAAGAATCTGTAGAGCCCACAGATGCCCTTGCCAAACCACAGATGAGCCTGAGCTGCAGCCCACTGAAAAAACGCCACAAACTCAGGGCTAACCTGGTTAAAAACACTCTTGCGCAGAGCAGAGATGGCACACAGGCTCCGTTGAACACCACTACAGCCGCTACTGTCACCACATCATCAGAGAACCAGAATGATGCCGCAGGTAATGCAAGCGAGTCAAAAGCAGGGGAGAGGAATGATGCCAAGGAATACGGTACCTCAGCTCCACAGATGTCGACAGACCACAGTCTAGCCCCTTATCGATGTGAGTATTGCCCCGAGACCTTCAGCAACAAAGCGATACTTCACATACACACGCAGGTGCACAAAAGGAGGTTCGTCAGTCACCTGGCATGCAAGTTTTGCCGCAAGAAATTCATGCACCTAAAGCGACTGCGGAATCATGAGCAGATTTGCAATAAGGCCCTCACAGCTGCGGATGATCTGGAACCCGGGTGCGGAGAGCCGCAGACCGACACGAGCGCAGATCACATGTCCAGCCCACATGATAGTACGCTGCCCACCTGCCCACAAGACTTACCAGACAGCAGTCCCCACAGTGATTTTCCCATGGACACCAGTGAGACCTTGCCAGAGCCGGAGAGTGGGCAGAGGGTGGTTAGCGGGCAAAGGGTGTACCTGTGTGCCGTGTGCAAACGCTCATACGTGACTTTGTCCAGCTTGAGAAGACATGAGAATGTACACTCGTGGCAGAGGACTTATCCATGCCACTACTGCAATAAAGTCTTCGCGTTGGCAGAGTATCGGACCAAGCATGAGATATGGCACACGGGGGAGAGGCGCTACCAGTGTATTTTCTGTCTGGAGACGTTCATGACCTACTACATCCTAAAGAACCACCAGAAAGCCTTCCATGGAATTGACCCTCGCTTAGCTGTGAACAAGAAGTCAGCCAGTGGGGGCTTCAAAAGCAGCATTTACCCCATTAAGCTCTATAGGCTTCTGCCCATGAAGTTCAGGAAAAggcaatataaaacatacagccAGACTCTCTCGGAGAGCACGGACTGCAACAGCCAAGCTATTCCAGTTTCTCTAGCCCCCGGTCCCCAGAATGCCTTGAGTTGCAGTCCTACCTCAGCTGGCtttgaaaacaacattgttCTGAGTAGTGCAGATGGGAGCTGTATGGGACAGCCACTATTTTCAATGCCAGTGACATTTATGGCCACTCCAAAGGTCATTGCCTCTGTGACGCCCCACATTACATTTGATCAGCCATGTCACGCAGATGTAACTCAGCCACTGTCTTCTGAAGCAGACATGTGTCGGCAGAAAGAGCTGAAGTCCATCTCCCAGGACACAGAGGCACTCGCTGACCCACTTAGCAGCAACAATAAGGGTTCTTCCGTGATCAGCTATGGGTACACGCATCCAGTTCCTTCCGTTATAATGCAGAGCAGCAGGGTGTCATCTGTAATTGTCCATGGAAATGACATGGGCTCTATAGGGGTTCATAACAATGACAATGAAGGCAGTTGCCTGCCGTTCTTAGAAATTAACACTGATGGCTTTTCAGAGACGAAAGGCAACGATAAGGGTCACGCAAGGGCATCTTATAGACGAGAAGAATTATCACGTGTTCAAGGTACCGAGACGACGGGAAGCCAGGCATATCTGTCAGGTTACGGCTCCGCTTCTGACAGGGGTGCACGTATTCACTGTACTGGGAGCAAAACTGAAACGTACATTGCAAAGCCAGCCTGTCCGGGTCCTTCCGTCAACAACCAAGTCCCTCCCCTATGCCAGATCACAGTGAAAATCGGGGATGAGGCCATCATACGCAGAAGGATCAAAGGGTCCAAGCTCTTCCAAAGGAAAATTAAGAAGTGCAGGTGGAGTCCTGTAACAGAAGAGGCGGAGGGCACCGTTACAGAGCCCAAAGAAAGAAATACGAACAGCGTCTGTTTACGGTCCAGGACAGAGGTGACTTCGGTCATAGAGGCCGAGACGTACGATGATGTGCCCGATCGCGATACTGGTGACAAATTGTGGCGTCCTTATTACTCCTACAAACCCAAAAAGAAGCCGaaggggggaaacaaaatgaGATCCAAACACAGGAGGAAGGGCAAGAGGGGCAGGGCTCCCGGGAAGCCCTTAAGATCCAACGAGATAGCAAAAGAGCCCGAATTTACCGAGGACTACCTAAGCACAAGTTACAGCATGCATGGTAAAGTCATATCGGACGTGACCAGGATTGGAAGGCAACTCAGGAAGAGTGTCCACAAGGAGCCTTCTTCCTGTGACATCTGCCAAAGTCTCTTCTCGAGCTCATCGGCACTCAAGATGCACATGATCAGCTGTCATCCCGATGGGCGGCCCAGTGTCTGCAAAACGTGTGGCAAACAATCCCCGCCCAACGAGGTAACGAACGCAAACTACCCCTTCCCCGACGACGAGAGAGAGTTTGTCTGCAAGAACTGCATCGAGGACGGCTCTTGCTTTAACAACTCCTTTACCAGCCACAAGACGGAGAAACGCTATCGTTGCTCCTTCTGCCCCCAGCGCTTCTTGTACCTGGCCACTAAGAAGAGTCATGAAAAGAAGCACCTGGAGAAATACGGGAAGGGCTACAACTGTTACTACTGCCAGAAGGTTTGCAAATCATCAGCCGCCCTGGCAATCCATCAAAAGAAGCACGTCATTAAAACGGAAGACGACAACGACGGCGACGACAAGGAATCAGCCAGGCTTCTGTGTGGCATTTCTAACGTTACGGGAGAACTGGACACCGGTGAGTCAGAGCACACCGACGCCGACACAGCTGTCACCACCAAACTCGAAGATCagagcgaaatcagcagcagcaACGGGTACTTTCAGGACTTCAAGGGGCCTGATATCAAGACACTGATATCATCGCCACACCGAGACACACTGTCCTTTCCAGGGTCTCCCACACAGCTGCCACCAGCCAAAGCCTGGAACAGCTACCCTTCCTATCAAGAGCGAATGAGCGGTCAGTGCCCTGAAAGCTGTGCAGAGCAGAGACAAAAGTACAGCTTCATGAGCGGGCAGGTGTACTCTGACTATTGCCTTCCCCCTGTCTTATGTCAGAACAATGAACACAACTCAGAGCAGTTTTCACCTTTACACGGGACGACAAATATACTTTCGGGCAGCACACAAGCAGACTTTCCGAAGGCAGAGTACAAGCAACCATGCAAGGAGGAAACGTCGTAA

Function

GO: NA

KEGG:

id description
K10510 ZBTB38; zinc finger and BTB domain-containing protein 38

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71275 lncRNA downstream 298609 38129295 ~ 38133966 (-) True G57011
TU71274 lncRNA downstream 298609 38130081 ~ 38133966 (-) False G57011
TU71282 lncRNA downstream 303373 38128984 ~ 38129202 (-) True G57018
TU71281 lncRNA downstream 304897 38127468 ~ 38127678 (-) True G57017
TU71280 lncRNA downstream 305235 38125981 ~ 38127340 (-) True G57016
TU71435 lncRNA upstream 64509 38501118 ~ 38503129 (-) True G57143
TU71466 lncRNA upstream 196503 38633112 ~ 38633397 (-) True G57165
TU71506 lncRNA upstream 335817 38772426 ~ 38773951 (-) True G57194
TU71580 lncRNA upstream 644812 39081421 ~ 39083424 (-) True G57244
TU71700 lncRNA upstream 1144002 39580611 ~ 39588074 (-) True G57351
AMCG00009460 mRNA downstream 18254 38378812 ~ 38414321 (-) True AMCG00009460
AMCG00009458 mRNA downstream 65042 38357920 ~ 38367533 (-) True AMCG00009458
AMCG00009455 mRNA downstream 113142 38317970 ~ 38319433 (-) True AMCG00009455
AMCG00009454 mRNA downstream 134741 38290897 ~ 38297834 (-) True AMCG00009454
AMCG00009453 mRNA downstream 151045 38279251 ~ 38281530 (-) True AMCG00009453
AMCG00009459 mRNA upstream 37575 38474184 ~ 38481035 (-) True AMCG00009459
AMCG00009467 mRNA upstream 318241 38754850 ~ 38762930 (-) True AMCG00009467
AMCG00009471 mRNA upstream 338949 38775558 ~ 38810559 (-) True AMCG00009471
AMCG00009470 mRNA upstream 380586 38817195 ~ 38820080 (-) True AMCG00009470
AMCG00009472 mRNA upstream 391356 38827965 ~ 38837594 (-) True AMCG00009472
TU70990 other downstream 1212499 37215960 ~ 37220076 (-) True G56800
TU70712 other downstream 2559978 35872123 ~ 35872597 (-) True G56568
TU70685 other downstream 2892765 35538887 ~ 35539810 (-) False G56546
TU71449 other upstream 143676 38580285 ~ 38582820 (-) True G57155
TU71520 other upstream 398707 38835316 ~ 38837564 (-) False AMCG00009472
TU71924 other upstream 1712116 40148725 ~ 40157471 (-) False AMCG00009521
TU72548 other upstream 4232518 42669127 ~ 42673707 (-) True G58025
TU72928 other upstream 5045812 43482421 ~ 43945297 (-) True G58333

Expression Profile