RNA id: AMCG00009465


Basic Information

Item Value
RNA id AMCG00009465
length 5170
RNA type mRNA
GC content 0.46
exon number 8
gene id AMCG00009465
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 38740320 ~ 38751025 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cAGATCTGCTTTGTAAATCTTGACAAAGACAACGAGGATTACCGCGATGATAAGTGTATAAAGAAGCTGGCTGccgtctctcctgctctccccaAGCTGATCGAGTCCCTAAATGTGCAACAGCCCAGGGAGAACGAGATCTTTCTCCTCAGCGGATTGGATTCCTCTGAACCATGCCAGCAGGACTTATACAATCAACAGaGCTTGCGAGCCGCGGATGTTTGCCTAATCCAGTGCGCTCGGGGAAACAAGCACACTCATCCCAGCTGCATCATTTTCGAAATCAACAAGTTCCTCATTGGGCTCGAGTCTGGTCAGGAGAGACAGTTGCAAACAGGCCGATACGGATACCAAAAAGCTGAGGACGACACCAACCGGTCCGTCTCTTCCATAGAGGAGGACTTTCTCACAGCATCTGAACATCTGGAGGACAGTGAAGAGGATGCCTACAGAAATGATTTTGAGAACAATGACTTTATGGATCTCTTCACACACGACAAAAACATAGGAGGAATGAGAATCGACAGGCTGAGGCATAAAAAAGGACCCAGCGGCGAATGGGACACAGCCGTGGAGggaactgtgtgtgtgacagcCGATAAACCCATGAAGCCGCCTCACAGTCGCTCTCCACTTCAAAATGCAGCAGAGTTCCAGACAGACTCAAAGAAATCCCATCATAGCACCAGCCAGGGATTTGCTTTATCAAAAAAAGCCACACAAGATGGGCACAGTGCAGTCCCAAAACAAAGCAGCAAAGCACAATCCCGCTCACAGAGTACACAAGAATCTGCAGGCCATTACGCCACAAACCTGGCAGAATCAGTGCTTCAAGATGCCTTCATTAAGCTATCCCAGGACGAGCCTTATTTCACAACAGAGGCAGCTTTAAGTGTCTCGGCGGGGAGCCACATAGCCCTCAGCTCCAAAACAAATGAGCCGAAACCCACTCGGGGATGCTCGTTTGAGCTACCCAAGATCGTTATTGTGCAAAGTCCAGATAATTGTGAAAGTGTGACAGAATGGCCAGGGACTCCgtcttcacacacaaacacctggGAGGAAAACGACAGCCTCAAAGACACTTGCGATCACCCCCTGGAACACGGCTCCGAGCCTTCCCACTTCCTGCCCAAACACACGCCTAAACCTGTGGAAGTAGCTTTAGCATGTGCAGCCAGGCTCTTGTCAGCGGCAGAAGCTTCGGCGGCCATCACACTTCACTGTAGCGTGACTGTGGGCTCCAGAATCGACCCGTTTACTACCAACATTGCAGAGGTCCTGCTGAATGAAGCATCCTCGATTTTAACCCAGCCAGAAAATTATGGGAGCATTGGAGACTTCCTGGAatccacacaaaataaaattgtggaAAGCATCACTAAACCAACAAGCTGTCATTTAGATGAGATTGAGGTGGACGCTTTTGCTAACATGCTTTCAGATGCCATCTTCAAACACTCGTTAGAGAgagcaatgaaaagaaaagaactgGAGAGCCcaagcaaatacatttctgacatACAGGACTTTGTTTTAGAGAGTGCAAACAACTTGCTGTTGGATGTGCTACTTATCACATCTAAGAAAATCAGTGATATTTCCAGGCACAGTAAGGTGTCCTCAGACATGGCTGAAGTTGATATCGGCTCCAAAGATTATGAAACAACCCTCAAGAAAAGCAGGCAGCCATTAAACCAGTTATTAAGTTTGATTGGATCAAGCCAGTCTGATAATATAGAAAACCAAACGAATCTGCTTCACAGCAAAGACAAGTTGTCAAACTTTACCGGGATCAAGGAAGAAAAAGTGGTCCAAGAAGAGCAAGAAACCGAACCAGCAAGCTCATGCTGTTTGGCACAAATTAAAGATCAGCGGGGAGCCAGTCTGGTCCATGTTGTACCGTTGGTCCAAGACTGTACCACCCTTCAGTATCAAATAAGTAAAAGTACCACCAAAGATCTGAAGATCACTCCAGAAACAGACAGAACAATGTCAGTGTCTGATTCAAAGCAGCCTTTCCAAGAGATACTCACCCAGAACATcatcacagaaaaacacagaagtaCTGTGCTGATGGACAATGACACTAAATTGTCCACAACATCCTCCTGGCAGCCCTTACTATCTCCCTTACCAAAACCAGTACCAGAAAGCAAATCCTCAGTTTCAGGTTTTGCAGACGATCTCGCTGCAACCGTAGTCTCGATGGCCACAGAGATGGCTGCGATCTGCCTGGAGAACTCCAACGGGAAGCAGCCATGGTTCTGCGCCTGGAAAGGGGGACTGGAGAACCCTGAGAACTACCTGATGCCCTGCAGGACAGTCAAAAGGAAAAAGGAGAGCCAGAGCAATGCGGCCGTCACGAAGAAGCACAGGCCACCCCGGctcagtgaaattaaaaagaaaaccgaGGAGCAGCCGGAGCTGATGGAGCGACTGATGAACAGGGTGGTGGACGAATCCATGAACTTAGACGAGCCCACGGACCCATTCACCTTGTTTGCTACAGAGGTGACCGCGAAGATCATGAACTGCCCCGAGCTGAATGTGGTGGACACTTCGAAACAGGGTCACCCGAGGACCCGGCTGCAGTGCGACAGGTGGAGCAGGGGGAAGGCATCAAGCTACGAAAGCATCCCAGAGGAAGATGCCGATTCCTCCCATCTGATCAACATGCTGGGCCCGGGGACCAGGCTCGGGCAGAACATGAGCCGGGGCAGTTCGATATCGAAGCAGTCGAGCTGTGAAAGTATCACAGACGAATTCTCCAGGTTCATGGTGAATCAGATGGAGAACGAGGGCAGGGGCTTCGACTTGCTGCTCGACTATTACGCCGGTAAAAACGCCAACAATATCTTGAGTTCGGCGATGCAGCAGGTCACCAAAAAGAACGGGCACCTCAACGTGAGGTCAACGTGCCTGTCCAAGCAGTCGAGCACGGAGAGCATCACTGAGGAGTTTTACAGATTCATGCTCAAAGAAATGGACAAGGAGAATAAAGATTACAATGCGCTGAAAACCAAAGAGTGGAGTAACAGCTTGTTGCCTCCGACTCCAAGAACACCTTTTTGTTTCAGGCAGTCGTCAATGCCGGACAGAAGATCATCTGACTCCAGGTTGACAGTGAACTCCCCTGTGAAAGCCAATTCTTTTGACGGCTTCGCCAGAAACATACATGGAGATACTCTCAGCATATATTCCGGCAACACAGTGTCAGCCACGGGCCTTTGCAAGTCGGATTCCTGTTTGTATCAAAGGGGACACACCGACCAGATCACAGACATGCTCATTCACGAGACCTGGTCCAGTTCCATCGAGTCTCTCATGCGGAAGAATAAGATTATCGTGGACGATGACGACAGCATGGATCTGGACCTGTCAATGAATGATTCCCAGCCTCACGTTGAGCTGTTCGCAAACAGACTGGCTGCCGACATTGTCGAGAGCGGGAGGTCTTTACTCGGGGGTCAGCAGGAGTCTGTGGACAGCCGACCGCTCACCCCAGTggcagagaggaggagatgTTTCAAAAGCAAGACTGAGTCACGTTTCAGGCAGCCGGCGTCTGACCGGATCAAATCGACCCAGGAAAGAAAGCCTTCTGTAGCCAACGAGGCTGTGTGCATTGCCTCCCTTCCTCAATGCCCGAGGGAAGTGCCTTTGATTCAGATAGAGGGAGATCAAAGAGAGGAGTTCAGTCAAGACACAGAAAGCCGTGACTCTCTTGTAGCCTCCCCTGGGACACCGGGCAGAGAGTGTCACCCTCGGGAGAAGCCCAAAGAAATGAGCACAGAGACGACCTCTTTTAATCATAGCAGtgaaataccagagGGAAATGCTCTGCTGAAAGACAATCAGGAAAATGTGGATGAAATGACCTCTGGGCTCTCAATAGGAGCCAGCAGCAGCCACAGGGAGCTTCTAGTAATGAACTTTGACCTGGAGCCCGATTGCGTGGACTCCGAATTACGGGTGACTCTGCAGTGGATTGCCGCCTCTGAGCTCGGAGTCCCAACCATCTACTTCAGGAAATCTCAAGAGAAGAGGATAGACAAGtttctgGAAATAGTGCGATTTGTTCATCAGAAAGCCTGGAATGTCGGAGACCTCTTCCATGCCGTTGTGCAGTATTGTAAACTACAAGATGAAAATGGCGATTCTTTGACGAGTCTATATGACTGGCTTTTGGAGACTTGTTAAGGTAAACAGATTACCGAGAATGTTAAAACACACGTTGCAGGATCAGTTTAATGTTCAAACAGAAATTGTGACCATATAGTCTTTGTGGGAGTTGTTGTTGCAAGGTACATACATGTTAGCGTATGTTAACTGCGTTATTGGTCTTATTAGAATACCTAGTCTAAAGAATGCCATTTGAAACAGATTGTCATATTTAGCGCTAAAATTATTGTGAAGCCGACGATGCAATTACACGTTGAATGATGATGCACCCTTTAAGATTAGCATGTTGCTCATTCTGAAATGCACGGAAGAGTTTGATcaacagggagagagaagaaatggATAGCCTTCAAAATTCAAAGCCATTGAAATCCTCCTAAAatcaaagcttttaaaaatattttcattgttattagACATGTTAAAGGGTTTGATTAAACTTATTTCAACATGCTAAAATTCCAAGATGCTATTTTCCAATTTGAAAGAACAATCAACCGAAGAATCTTGTACTCACGTACCGAAATGAGGCATACCTTATATCTTGCACAATTATCCATTTGAAAATCGACTATTCATTTACACAACCATGTGACGAGGGTACGAGAGATGTATCTGGCATTTATTCCCGCTCCTCAATGTACAAAACCTTTTTgtaacttcaaaatgtattcataagtAAGCTGGTTATTTGTGCaccatattaatttaaatgatttattttagatatctgtaaatattgtatattttgggTAAATGCACCTTGAGTACAATATGATGCTCTTAATAAATGACCGAGGTAAAATGGTGTggaatataatttgtaatataaagaGCAATTTCTATGTGAATCTGGTTGTAAGTTTTTTTGCTGTAATAGTCCAGTCATGTTTTATCAGCATTCAAAGCACACACAGAGTGTCAAAGATGTCACTGTATTACtgaatgtaacattttggaattaataaatatctatgtaatgTGA

Function

GO:

id name namespace
GO:0001917 photoreceptor inner segment cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71465 lncRNA upstream 106969 38633097 ~ 38633351 (+) True G57164
TU71462 lncRNA upstream 112185 38627919 ~ 38628135 (+) True G57161
TU71304 lncRNA upstream 459841 38202794 ~ 38280479 (+) True G57036
TU71255 lncRNA upstream 606354 38130082 ~ 38133966 (+) True G56995
TU71241 lncRNA upstream 672167 38063790 ~ 38068153 (+) True G56982
TU71480 lncRNA downstream 6355 38757380 ~ 38834945 (+) True G57175
TU71626 lncRNA downstream 552312 39303337 ~ 39306230 (+) True G57286
TU71627 lncRNA downstream 555463 39306488 ~ 39306774 (+) True G57287
TU71673 lncRNA downstream 708373 39459398 ~ 39459676 (+) True G57329
TU71734 lncRNA downstream 1055558 39806583 ~ 39806928 (+) True G57378
AMCG00009468 mRNA upstream 10934 38655785 ~ 38729386 (+) True AMCG00009468
AMCG00009464 mRNA upstream 124482 38614820 ~ 38615838 (+) True AMCG00009464
AMCG00009463 mRNA upstream 156889 38541989 ~ 38583431 (+) True AMCG00009463
AMCG00009462 mRNA upstream 229298 38481113 ~ 38511022 (+) True AMCG00009462
AMCG00009456 mRNA upstream 266281 38467267 ~ 38474039 (+) True AMCG00009456
AMCG00009466 mRNA downstream 12746 38763771 ~ 38775610 (+) True AMCG00009466
AMCG00009469 mRNA downstream 63010 38814035 ~ 38817666 (+) True AMCG00009469
AMCG00009473 mRNA downstream 90931 38841956 ~ 38843311 (+) True AMCG00009473
AMCG00009474 mRNA downstream 118462 38869487 ~ 38900537 (+) True AMCG00009474
AMCG00009477 mRNA downstream 382829 39133854 ~ 39155094 (+) True AMCG00009477
TU71381 other upstream 282728 38442255 ~ 38457592 (+) True G57105
TU71113 other upstream 1124037 37610343 ~ 37616283 (+) False AMCG00009428
TU70945 other upstream 1372649 37360101 ~ 37367671 (+) True AMCG00009405
TU70668 other upstream 3350993 35388914 ~ 35389327 (+) True G56536
TU70456 other upstream 4721505 34015670 ~ 34018815 (+) True G56369
TU71670 other downstream 683875 39434900 ~ 39436995 (+) True AMCG00009480
TU71802 other downstream 1196981 39948006 ~ 39949200 (+) True G57430
TU71881 other downstream 1351358 40102383 ~ 40104948 (+) False AMCG00009516
TU72035 other downstream 2239777 40990802 ~ 40994659 (+) True G57604
TU72303 other downstream 3284993 42036018 ~ 42078241 (+) True G57830

Expression Profile