RNA id: AMCG00009466


Basic Information

Item Value
RNA id AMCG00009466
length 3204
RNA type mRNA
GC content 0.46
exon number 10
gene id AMCG00009466
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 38763771 ~ 38775610 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTTTCCTCACACCCTATCTTGTTGGACCCTACAAGAACATTTCAGAGCATGAGGTGACTAACGTCCTGTTTCCCATCTGGACTTACTCCTACCTGGTAATTCTCTTACCTGTGTTCCTGCTGACTGATTTTTTACGCTACAAACCAGTCATTGTTTTTCAAGGTGTTTGTCTGGTGTCAAACTGGAGCCTGCTTTGCTTCGCCCAGGGCTTGCCAGCCATGAAGTATTTGCAATTCAACTTTGCCATGGTCACTGCGACAGAGGTGGCCTACTTCTCCTACATCTACAGTGTGGTGTCTTCAGACCACTACCAAAAGGTGACCAGTTATTTGAGAGCCGTGACTTTAGTGGGCTACACTTTGGGCTCCACCTTAGGCCAGATTTTGGTTTCAGTGGCTTCCTTGCCTTATTTCTACCTCAATGCTGCCAACCTGGCAACGGCATCTATGGCCTTCCTCTGCTCGTTCTTTCTCCCCATGCCCCGGGGTGGAATGTTCTTCAAGAGAGAAAGCAGAGTCCTCAACCTCAAGCAGGACCACAACCTCAGAAGCAACAGCATTGATGTGAAAATGCCATCAAGCCCTTCTCTAGATGTTGTtccacacacagagagggaggacaCGGAGGAGTTGGGGCTCAGCAGAGAAAGTGTAAGACGTGCCATCGGTCTGCTGTGGCAGAGCTTCCGGGAAACCTACTCCTCCAAGAAGCTCATCTACTGGTCGCTGTGGTGGGCTTTAGCCACCTGTGGGTACTACCAGATCTTCAACTACATCCAGTTGCTGTGGAATCACATTGAACCCTCTGGAGATTCCATGGTGTACAACGGTGCAGTGGAGGCAGTGACAACACTAGTTGGTGCCATCGCAGCCTTTTCCGTCAGTCACGTGAAGCTGGACTGGGATCTGTGGGGAGAGCTGGCCCTGGGGGTCTTTTCTGCGCTCAGTGCGGGAGCCGTGTACATGATGGGGTTCACACGCAATATCTGGGTCTGTTATACCGGTTACGTCACCTTCAAAGCATCCTACATGTTGCTGATTACTATAACCACGTTTCAGATCGCTGCCAACCTGTCCATGGAGTGCTATGCCCTGACGTTCGGGATGAACACTTTTGTGGCGATCCTTCTTCAGACTGTAGTGACTGCAATTGTTGTTGATGAAAGCGGATTGGGATTAGACATTGTCACCCAGtTCATTGTCTACGGCAGCTACTACGTGGCTATTTCTGTGCTGTTTGTGACCCGGGGGCTGTATACGAGTTATAACTTTGCTACAGAACAGCGGAGTAGACATCTTCAAAAAATGGAGGCTTTCAGGAGATTCCGGTCCAGCTGGCAGTTCCCCACTGctctgatgtgtgtgtatgggttCTTCTCCATGGTCAAGCCTTTAGAGCCCTTTCTCATACCATACCTGACAGGACCCGACAAAAACCTCACAACACAGCAGGTGGGAAATGAAATTCTTCCAGTGTGGACATACTCTTATCTCATCATCCTGTTGCCAGTGTTCTTGGCCACAGACTACTTAAGATATAAACCAGTCATCATTTTACAAGTCCTTAGTTTAATTACGACAACAACAATGCTCCTCTGGGCCGACGGAGTGCTGGCCATGCAGTTTATGGAGTTCTTCTACGGCGTAGTCACTGCCACCGAAATCGCATACTTCTCATATATCTACAGTGTGGTAGACCTGGAGCGCTACCAGAAAGTGACCAGTTACTGCCGGAGTATTCAGCTTGCTGGCTACACCGTGGGGTCTGTGCTGGGCCAATTCCTGGTAACTTTTGAGGCCATGTCGTTTTACAACATCCTCATCATGACATTAGTCTTATCGTGCATCGCGTTGATAGCCTCCTTTTTCCTCCCTATGCCggaaaaaagcatgtttttccACCGGAAAAACTGTATAACACCAGAGGGCAACGGGCAGATCCAATTACCTGAAGACACGGACAAAACCACTGCCCAGAAAACTGGTGGCAACGACTTGGGTGGAAGCACATCTGCCTCGGTCGTGCATGAGAACACCGGCTTTGTCAGCATACTCAAGCAGTTATGGTTCGACTTCTTGAAATGTTACACAGCAAAACAGCTGATTTACTGGTCCCTGTGGTGGATCCTGTCTACCTGCGGATACTACCAAGTTGGCAATTACATCCAAGTGCTGTGGGAAGACAAGAAACCTTCTCAAAACTTCACTCTATACAACGGAGGTGTCGAGGCAGCTGCACACCTCTTTGGAACAGCTACGACTTACGCAGTGGGTTTCATGGGAACCGATTGGACAGTCTGGGGAGAGCTGACTTTAGGATTGTTCTCTGGTCTCGGAGCAGCAGCGCTTTTACTCATGAGTCTCACAGACAGCATTTGGATCTGTTATGCAGGTTACATTGTTTTCAAGGGACTGTACATGCTGCTCATAACTATAGCTATGTTTCAGATTGCTGCTCACCTAAGCATGGAACGCTATGCCTTAGTCTTCGGAGCCAACACTTTTGGAGCCCTCATTCTTCAGACCCTGGTCACTGCGATCGTCGTGGACTCCAGAGGTCTCCGATTAGACATTGTTTCTCAGtttattatttatggGTCCTATTTTGGAGTGATTGCAGCTATATTTGTCATCAGAGGGATATACACGGTGGTCAGTGCAAGACGAAAACGAAAATCGGTGTTGCCAGAAACAATCGCAATACCAGATGAAAACGGCCTTCACAAGGACGTCCTACTGAGTCACAAATTCTGAAGGGAAGTGGATTGCAAGTTGTGTGAACACGGAGACGTCACGCTCCTAAACTCTAAAAGAGTCatcatgcaattaaaacacatacactaTGTGTAACAGGACACTTTTTAGTTTAAGTGTTATTAGGTCTAGTTTTGTAGAAATAAACTGTAGCTAATGAGctgcaaattgtattattattttcgtCAAGGTTTCTgtacatttgttattaaaagaaaaataaaatccaagtAAAATGTATGCACTGAATTGAAAGGAAACATCTGGTTGAGATGTTCCAGCAGTTAACATGGCTCAGGTGTTACTCAATGCCCTTAAGCTCAccacatgtatgtgtgtaaaatataataaaattaaataaaaccttctAGATAAAAGAGGGGCTGCAAATTATAAATGAAGTTTCTTTAAGTTTATtcttaaaagtaaaatctaaaagTAAAGTACAAG

Function

GO: NA

KEGG:

id description
K14610 SLC19A2_3, THTR; solute carrier family 19 (thiamine transporter), member 2/3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71465 lncRNA upstream 130420 38633097 ~ 38633351 (+) True G57164
TU71462 lncRNA upstream 135636 38627919 ~ 38628135 (+) True G57161
TU71304 lncRNA upstream 483292 38202794 ~ 38280479 (+) True G57036
TU71255 lncRNA upstream 629805 38130082 ~ 38133966 (+) True G56995
TU71241 lncRNA upstream 695618 38063790 ~ 38068153 (+) True G56982
TU71626 lncRNA downstream 527727 39303337 ~ 39306230 (+) True G57286
TU71627 lncRNA downstream 530878 39306488 ~ 39306774 (+) True G57287
TU71673 lncRNA downstream 683788 39459398 ~ 39459676 (+) True G57329
TU71734 lncRNA downstream 1030973 39806583 ~ 39806928 (+) True G57378
TU71769 lncRNA downstream 1099271 39874881 ~ 39875170 (+) True G57401
AMCG00009465 mRNA upstream 12746 38740320 ~ 38751025 (+) True AMCG00009465
AMCG00009468 mRNA upstream 34385 38655785 ~ 38729386 (+) True AMCG00009468
AMCG00009464 mRNA upstream 147933 38614820 ~ 38615838 (+) True AMCG00009464
AMCG00009463 mRNA upstream 180340 38541989 ~ 38583431 (+) True AMCG00009463
AMCG00009462 mRNA upstream 252749 38481113 ~ 38511022 (+) True AMCG00009462
AMCG00009469 mRNA downstream 38425 38814035 ~ 38817666 (+) True AMCG00009469
AMCG00009473 mRNA downstream 66346 38841956 ~ 38843311 (+) True AMCG00009473
AMCG00009474 mRNA downstream 93877 38869487 ~ 38900537 (+) True AMCG00009474
AMCG00009477 mRNA downstream 358244 39133854 ~ 39155094 (+) True AMCG00009477
AMCG00009479 mRNA downstream 501481 39277091 ~ 39302785 (+) True AMCG00009479
TU71381 other upstream 306179 38442255 ~ 38457592 (+) True G57105
TU71113 other upstream 1147488 37610343 ~ 37616283 (+) False AMCG00009428
TU70945 other upstream 1396100 37360101 ~ 37367671 (+) True AMCG00009405
TU70668 other upstream 3374444 35388914 ~ 35389327 (+) True G56536
TU70456 other upstream 4744956 34015670 ~ 34018815 (+) True G56369
TU71670 other downstream 659290 39434900 ~ 39436995 (+) True AMCG00009480
TU71802 other downstream 1172396 39948006 ~ 39949200 (+) True G57430
TU71881 other downstream 1326773 40102383 ~ 40104948 (+) False AMCG00009516
TU72035 other downstream 2215192 40990802 ~ 40994659 (+) True G57604
TU72303 other downstream 3260408 42036018 ~ 42078241 (+) True G57830

Expression Profile