RNA id: AMCG00009469


Basic Information

Item Value
RNA id AMCG00009469
length 1811
RNA type mRNA
GC content 0.41
exon number 4
gene id AMCG00009469
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 38814035 ~ 38817666 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGACCTTGGCTAATTCCACTAGCACGTTTGTTCAAGGCAAGTCAGATTACACCTATTGTcactttgcatatatattttgactCATCATAAATCACAGATCAgttttcatttgtatgtttGAACTAGCATTACCAGATGCCATAAACATACAGATATGCTTGGCCCCCTACCTTGCTGCTTACAGCTACAtctacatttgtttaaagaGTCCTTTGGTTTCCACTAATGAGCAGTGACAACATTTTTAACTATCTGTGACTTAAATtatgccaaaaaagaaaaggaaagatatatacaaacacaacacaaatagaTTGCGTGTGGACGTGTTCGAGAGGATCTTGTGACACACATTAAAGTTGATTAAGAGGTTGTACACCTTTGCCGTAGTCATAAAATATCACATCAGTGATGCATCACAGCTTCATGTACTTTCAACCAGGaaatacatttctcacaaaGCGAAAAAAACTCTCCGAATAATATTTAACCAGGAACAGTTTATAAAGGAGAGTGTGAGTTAAACCCCCTCAGTATCTTTCTCAGGACTGAACAATCACCCTCTCAGCCGTCAACATGACTTGCTGTGAAGGTTTTACCTCCTGCAATGGATTCTTCCTCATGTCTCTCTCCATTATAGCCATGGTCTTAAACTTGCTCCCAATGATGGCAAACTATGCGATGGATGGCCAGCTGTTTGAGAACCCGGTCTCCTGCTTTGAGTGGTGGCTGCCTGGATTAGTGGGAGGAGGTATTTTGGTTCTGCCAGCAGTGTCAATGGCTTTCGCTGCAAAGAAGGGAGGAAGCTGTAACTCTAGAATTGGGatgCTCCTGTCGGCTTTCTTATGCATTGTCAGCATTATTGGTGCACTATACTGTGTATTAATATCTTTGTTTGCCCTGGGGAGTGGTCCATTGATATGCAAGGGCCCCCAAGCTGGATTATCCTCTTGTGATTTCAGCATAAAAAACATCAGCTCCTATTCTGAGCTGAACTTCGACATCACATGGTACCTCGAGGCGGACGGCTGCAGAAACGTCACTGAGAGGAGTGGAACCGGAAACCATTTCGTGAATGCAGACCTGTCTATAGATCTGAATGAGGCCCAGCTGGTCAATCTGCACCTCATCACCTTCGCCGGGCTCAGTGCGGTCGCTCTGCTGGAGATCATCTTCAGCGTCCTGCAGATAATGGCCGGACTCTGTGGCTGTGTGTGCGGCACTTCAAACAGGACTAGGCCGGTGTAGCACGACCCTCTAGCCTCGGCAGATCTTCTTAGTTGTAGTACTGTCATTATTGTTCATCTTGACTGACAGACTTGTTTTGTGCGTATTATACATTTCTTGTCAACAACACAATCGAGTTGAAGTCACAAAGTATCTTACTGGCTAATGAAAATTATGAACCAAAGAAGTAGCAATATGTTATACCCTCCCTTCAGGGCACTTAGCTAAGCCATATATAATTGCACATATTCATCCTAAtacaagaattgtattttttacaccTACAGGGGGCATTGCCAACTAAAACTTGCACTTTTAATATTTCTTGTTGCATTTGTGGAAACTCATTAAAGTACATGCCAGAATAGTATatacttgttttttaatggaaaatgtattgtttttaattaccagGCACTACACAATTATCCCTGTGCTCTGGATctactttttcatttgtttattacggtgtactatttatttattaataaaaaacatacatgtatgaagcctacagattattttcttgtaaacaCTAAGACTCAATAAATCCACCCGTTCTGAATAAAGGATGTAAATCAACA

Function

GO: NA

KEGG:

id description
K24923 TM4SF20; transmembrane 4 L6 family member 20

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71465 lncRNA upstream 180684 38633097 ~ 38633351 (+) True G57164
TU71462 lncRNA upstream 185900 38627919 ~ 38628135 (+) True G57161
TU71304 lncRNA upstream 533556 38202794 ~ 38280479 (+) True G57036
TU71255 lncRNA upstream 680069 38130082 ~ 38133966 (+) True G56995
TU71241 lncRNA upstream 745882 38063790 ~ 38068153 (+) True G56982
TU71626 lncRNA downstream 485671 39303337 ~ 39306230 (+) True G57286
TU71627 lncRNA downstream 488822 39306488 ~ 39306774 (+) True G57287
TU71673 lncRNA downstream 641732 39459398 ~ 39459676 (+) True G57329
TU71734 lncRNA downstream 988917 39806583 ~ 39806928 (+) True G57378
TU71769 lncRNA downstream 1057215 39874881 ~ 39875170 (+) True G57401
AMCG00009466 mRNA upstream 38425 38763771 ~ 38775610 (+) True AMCG00009466
AMCG00009465 mRNA upstream 63010 38740320 ~ 38751025 (+) True AMCG00009465
AMCG00009468 mRNA upstream 84649 38655785 ~ 38729386 (+) True AMCG00009468
AMCG00009464 mRNA upstream 198197 38614820 ~ 38615838 (+) True AMCG00009464
AMCG00009463 mRNA upstream 230604 38541989 ~ 38583431 (+) True AMCG00009463
AMCG00009473 mRNA downstream 24290 38841956 ~ 38843311 (+) True AMCG00009473
AMCG00009474 mRNA downstream 51821 38869487 ~ 38900537 (+) True AMCG00009474
AMCG00009477 mRNA downstream 316188 39133854 ~ 39155094 (+) True AMCG00009477
AMCG00009479 mRNA downstream 459425 39277091 ~ 39302785 (+) True AMCG00009479
AMCG00009484 mRNA downstream 560583 39378249 ~ 39393565 (+) True AMCG00009484
TU71381 other upstream 356443 38442255 ~ 38457592 (+) True G57105
TU71113 other upstream 1197752 37610343 ~ 37616283 (+) False AMCG00009428
TU70945 other upstream 1446364 37360101 ~ 37367671 (+) True AMCG00009405
TU70668 other upstream 3424708 35388914 ~ 35389327 (+) True G56536
TU70456 other upstream 4795220 34015670 ~ 34018815 (+) True G56369
TU71670 other downstream 617234 39434900 ~ 39436995 (+) True AMCG00009480
TU71802 other downstream 1130340 39948006 ~ 39949200 (+) True G57430
TU71881 other downstream 1284717 40102383 ~ 40104948 (+) False AMCG00009516
TU72035 other downstream 2173136 40990802 ~ 40994659 (+) True G57604
TU72303 other downstream 3218352 42036018 ~ 42078241 (+) True G57830

Expression Profile