RNA id: AMCG00009470


Basic Information

Item Value
RNA id AMCG00009470
length 1761
RNA type mRNA
GC content 0.50
exon number 4
gene id AMCG00009470
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 38817195 ~ 38820080 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAGGACCCGGAACTGTATGTATCCGAGTCGCAGCGCAGAGGGGACGCTTCCTGGTGACGCACACTGCCTGCGAGCTGTCATGGCGTCCGGGTACCTGGTCGGTCGTGTCTTGTCCCCGCTGGGAGTTCACGTCCACAGGGTGTGCAGGACTGTCCTCCTCACGCAGACCCGAGAGAAGAAGCGATGGATGAAAGCTTACACGTTGTTgatggagaggaagaggaagctgGAGGGACCGCCAGCAGCCAAACCCCGCTCTCATCAGCCTAACTGGGATTACCATGCCGAGATCGAAGCTTTCAGTGCTCGGCTCCACGAGAACTTCTCCCTGGACCTCCTCAAGACGGCCTTCGTCAATCCCTGTTACGTCCAGAGGGAAGAGGTGAACCGCCGGGAGCTCGGTGTGGACAAGGAAACTGTGGCTCTGAGCCTGAAGGACAATCTGGAGCTTGGCAGACAGGGGCGGGAGTTCTCCGAGAGCTACCTCACCGACTGGTGCCGGAGCAACTACCCCAGCCTGCCAGCTGAGGGCGTCGGCGCCGTCATGCGCTACCTGAGCCAGCCGGCCGTCGTGTGCCATGTGGCCCGAAACTTGGCTGTGGAAGAGCTGACCCTGAGCGCCCAGTTCCCCGTTCAGGAGGAGGTTCTGCAACAGACGTTTTTCGCCGTGATCGGGGCGTTGCATCAGAGCAGCGGCCCACAGAGAGCGGGCTACTTTATCCGGGACTTCTTAATAACTCAGCTGATTGGGAAGGACCTGTTTGAACTCTGGCCTGTGGTCAACCCAATGGGCCTGCTGGTAGAGGAACTGACTCGCAGGAAGCTGTCTCTGCCAGAGCCCCGGATCACGAGGCAGtctggagccagcactgtgcTACCCCTCTACTTTGTTGGCTTGTATAGtgatAAGAAGCTGATTGCGGAGGGTCCTGGGGAGACGGTCCTCGCTGCGGAGGAAGAGGCGGCCCGCGTTGCCCTCCGGAAGATCTACGGGTACACAGAGAACAGGCCACCCATGGACTTCTCCAAACCCAGAGAGGAGCCCACGGATGCCCAGGCCATCCGCAGCACTTAGCCACTGCAATATTTCAACGGTCATCCTATGTATCGCACTGATAACAACCGGAGATCTTCAGACTTGTATCTGGCTGCTTCCAAGGACTGACTCACATTCAGGATCATTAGACTGATGTTAGAAtgtggattatttttttttgtatttgattgttaTTATTGGTTGTGAATAAAAAAGTCACGAGAAGAAATGTCTTATCACAGCAATTGTGTGTTGTTGATTTACATCCTTTATTCAGAACGGGTGGATTTATTGAGTCTTAGtgtttacaagaaaataatctgtaggcttcatacatgtatgttttttattaataaataaatagtacaccgtaataaacaaatgaaaaagtagATCCAGAGCACAGGGATAATTGTGTAGTGCctggtaattaaaaacaatacattttccattaaaaaacaagtatATACTATTCTGGCATGTACTTTAATGAGTTTCCACAAATGCAACAAGAAATATTAAAAGTGCAAGTTTTAGTTGGCAATGCCCCCTGTAggtgtaaaaaatacaattcttgtaTTAGGATGAATATGTGCAATTATATATGGCTTAGCTAAGTGCCCTGAAGGGAGGGTATAACATATTGCTACTTCTTTGGTTCATAATTTTCATTAGCCAGTAAGATACTTTGTGACTTCAACTCGATTGTGTTGTTGACAAGAAAT

Function

GO: NA

KEGG:

id description
K17425 MRPL44; large subunit ribosomal protein L44

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71506 lncRNA downstream 43244 38772426 ~ 38773951 (-) True G57194
TU71466 lncRNA downstream 183798 38633112 ~ 38633397 (-) True G57165
TU71435 lncRNA downstream 314066 38501118 ~ 38503129 (-) True G57143
TU71275 lncRNA downstream 683229 38129295 ~ 38133966 (-) True G57011
TU71580 lncRNA upstream 261341 39081421 ~ 39083424 (-) True G57244
TU71700 lncRNA upstream 760531 39580611 ~ 39588074 (-) True G57351
TU71703 lncRNA upstream 768606 39588686 ~ 39588911 (-) True G57354
TU71735 lncRNA upstream 986555 39806635 ~ 39806927 (-) True G57379
TU71768 lncRNA upstream 1053891 39873971 ~ 39874229 (-) True G57400
AMCG00009471 mRNA downstream 6636 38775558 ~ 38810559 (-) True AMCG00009471
AMCG00009467 mRNA downstream 54265 38754850 ~ 38762930 (-) True AMCG00009467
AMCG00009459 mRNA downstream 336160 38474184 ~ 38481035 (-) True AMCG00009459
AMCG00009461 mRNA downstream 380586 38432575 ~ 38436609 (-) True AMCG00009461
AMCG00009460 mRNA downstream 402874 38378812 ~ 38414321 (-) True AMCG00009460
AMCG00009472 mRNA upstream 7885 38827965 ~ 38837594 (-) True AMCG00009472
AMCG00009475 mRNA upstream 88942 38909022 ~ 38935195 (-) True AMCG00009475
AMCG00009476 mRNA upstream 192762 39012842 ~ 39013371 (-) True AMCG00009476
AMCG00009478 mRNA upstream 446116 39266196 ~ 39271483 (-) True AMCG00009478
AMCG00009485 mRNA upstream 485893 39305973 ~ 39308183 (-) True AMCG00009485
TU71449 other downstream 234375 38580285 ~ 38582820 (-) True G57155
TU70990 other downstream 1597119 37215960 ~ 37220076 (-) True G56800
TU70712 other downstream 2944598 35872123 ~ 35872597 (-) True G56568
TU70686 other downstream 3277385 35538887 ~ 35539810 (-) True G56546
TU71520 other upstream 15236 38835316 ~ 38837564 (-) False AMCG00009472
TU71924 other upstream 1328645 40148725 ~ 40157471 (-) False AMCG00009521
TU72548 other upstream 3849047 42669127 ~ 42673707 (-) True G58025
TU72928 other upstream 4662341 43482421 ~ 43945297 (-) True G58333
TU73015 other upstream 5169431 43989511 ~ 43995654 (-) True AMCG00009672

Expression Profile