RNA id: AMCG00009475


Basic Information

Item Value
RNA id AMCG00009475
length 3895
RNA type mRNA
GC content 0.51
exon number 15
gene id AMCG00009475
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 38909022 ~ 38935195 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTACTGAAACCTGTGCTGATGCTAAtctgtgattttcttttcttccagaTCTCGGATGAGTTTGGCAATGTGAAGTTCTGCGTGGATGCCAGCGAGCCAGATATAGGGAGCTGGCTCAAATACATCCAGTTTGCTCAGCTCTACGATCAGCACAATCTTGTTGCATGCCAGATAAATGATCAGATATTTTATAAAGTTACACGAGACATTGACCCAGGAGAGGAGCTGCTACTGTTTATGAAGGCGGACAATTATTCATGTCAGGCGATGGCACCAGATATACACGGGAGTGTTTCATACCAAGTTTCTCCCCCTTCTTTCCCGCTGTGGCATTCAGAGGAGCGCCAGTACCGTTGTGAGGACTGTGACCAGCACTTTGAGTCCAAGACAGAGCTGTTGGATCACCAGAAGTACCCCTGTAGCACTCCGCACTCGGCCTTCTCCATGGTGGACGAGGGGCTTCAACACAAGACGGGCAGCGAGTCTGACCTCCACGATCTCCACGATCTGCACCATCCGCAGGAGTGCAAGGAGTGTGACCAAGTGTTTCCAGATGCCCAGAGCTTGGAGAGACACATTCTGACGCACTCGGAGGAACGCGAGTACAAGTGTGACCAGTGTCCTAAAGCTTTCAACTGGAAGTCCAATCTGATCCGCCATCAGATGTCACACGACAGTGGAAAGCACTACGAATGTGAGAACTGTTCAAAGGTGTTCACAGACCCCAGTAACCTCCAGAGACACATTCGCTCTCAGCACGTGGGGGCACGGGCCCATGCTTGTCCAGACTGTGGGAAGACTTTTGCCACGTCTTCTGGGCTGAAGCAGCACAAGCATATCCACAGTAGTGTCAAACCCTTCATATgTGAAGTGTGCCACAAGTCCTACACTCAGTTCTCAAATCTGTGCCGCCACAAGCGCATGCACGCTGACTGCCGGACTCAGATTAAGTGCAAAGACTGCGGACAAATGTTCAGCACAACATCCTCCCTGAACAAGCACAGGAGGTTCTGCGAAGGAAAGAACCATTTTGCTGCTGGCGGACTGTTCGGTCAAGGCATTTCGCTGCCAGGGACGCCCACTCTGGACAAGACGGTGGTGGGCAACCTCAATCACAACAGCGCGGGATTGGCCGACTACTTTGGGACCAACAGGCATCACGGTGGACTGACCTTCCCTGCCGCTCCTGGTTTCCCCTTCAGCTTCCCAGGTCTTTTTCCATCAGGACTTTATCACAGGCCACCACTAATACCGGCCAGCTCCCCTGTGAAGGGACCTCCAGGCAGTGAGCAGAGCAAGAACCCTCTTCTGACACCCCCACAGGTCCTGCCAGGGGCTCCAGATATTCTCCAGTCTTTAAGCAAGCAGTCGCCGGCCTCCGAATCCAGAGGAATGGAGCTTCAGACTGACCCCTCCTCCAAGGAGAGGCCCCTGGCTAAAATGAGTGACCAATCGGAGAGCAGTGACCTGGATGACGTCAGCACACCGAGTGGCAGCGACCTGGAGACCACCTCTGGCTCTGACCTGGAGAGTGACCTGGAGAGcgacaaagagaaaaacaaggagAACGGCAAAGCTCTGGAAGGGAAGAAGAACAGCCCCCAAAACCTCACTTCTAGCAACAGCGCGAAGAAGGAATTCCCCAATCACTCACTGTTTCCCCCTTCCCTTGACGAGCAAACCGCCGTCTCCGGTGCGGTCAACGATTCCATAAAGGCCATAGCCTCCATTGCTGAGAAATATTTCGGCTCCACTGGACTTGTAGGGCTGCAGGACAAAAAAGTTGGGGCCTTGCCCTATCCTTCCATGTTCCCTTTGCCTTTTTTCCCAGCCTTCTCTCAACCAATGTACCCATTCCCTGAAAGAGACTTGAGGCCTCTACCTTTAAAAATGGAGCCACAGTCTCCCAACTGTGAGTCAAAAAAAGCCCAGAGCAGGAACTCTGAGTCACCCTTTGACCTCACCACTAAACGCAAGGAGGAGAAACCAGCTGCCTTCACGTCTTCAAAGCCAGGGGCTTCACAGTTAGCAAACCCAGACCAGCCCCTAGACTTGAGTATGGGCAGCCGGAGTCGGGCTGTACCTACTAAAACGGAAGAGTCCAGGAAAAATCATGTGTTTGGCGAGGAAAAAGCCGCTGATATTGATCAGCTCAAAGCCCCTGATGCATCACTACAACACGCCAGACCTACTCCTTTCTTTATGGATCCCATTTATAGGGttgagaaaaggaaaatgaacgATCCGTTCGAAGCTCTGAAAGACAAGTACATGAGACCGGCGCCTGGATTCCTCTTCCACCCTCAGTTTCGTTTGCCAGATCAGAGAACATGGatgacaGCTATTGAAAACATGGCAGAAAAACTGGAGACTTTTAACTCACTAAAACCAGAAGCTAGTGATCTCATACGGTCTGTCCCTTCCATGTTTGACTTTAGGGCCCCTCCAAATACCTTACCCGAAAACCTTCTGCGAAAGGGCAAAGAGCGCTATACCTGCAGGTACTGTGGTAAAATCTTTCCACGATCTGCAAATCTAACCCGTCATCTGCGGACTCACACGGGAGAACAGCCGTACAGGTGTAAATACTGCGATCGCTCGTTCAGTATCTCATCCAACCTGCAGCGCCACATTCGCAACATCCACAACAAGGAGAAACCCTTCAAATGTCACCTGTGTGACCGCTGCTTCGGTCAGCAGACTAATCTGGACAGGCATTTGAAGAAACATGAGAATGGGAATTTATCAGGTACGGCGATGTCCTCCCCTCAGTCTGAACTGGACAGCAGCAGTGCTATACTGGACGACAAAGAGGACTCTTACTTCAACGAAATCCGAAATTTCATCGGCAACACCAGCCAGAACCACCGGTCACCTGGGCACTCTGAGGAAGGACTGAACGGAAGCCAGTTCGAAGACAGCAAGGTGCTGCTGCCCAGTCGGGAGTCACATGACCTCgaagaagaggaaggagaggacGAGCTCGGggcggaggaagaggaggaggaagagcacaGCGACGCCGCGGGAAAGTCTGGGGACGAACCCCTACCGGGCAACATGGACGACGACATCATTCAGGATGACATGGACTTCGAGGGACCGAATGACCTGGTGTTGAACTGCAAGACCTCCCCCAGAAGGTATAAAGAGGAGGACAAGAGTGGCTTCTCCGCTCTGGACCATATCCGCCACttcacagacatccacaagaTGGAGGAGAACGAGTACAATGACGGAGAGATCGCTGCGTTCAGCGCCGCCCACCTCCCAGAAGCCATCAAACAGCCGCTGTACAGAAAGTCGAAATCACAGGCGTACGCCATGATGCTCTCACTGGCAGACAAAGATGCCATCCACCCGGGCCCCCACACTCCTGCCAACATGTGGCACAGCATGGCCAGGGCTGCGGCCGAGTCCAGCGCCATCCAGTCACTCAGCCACGTATGACGCTTCCAGACCTGACGAAAATGGGACCAAGTCCAAACTCCACACCATGGCTCTTTTACATGGGACTATTTAAAGACTGCTGAGCAGAATGCCTTATATACATGTCCAGGGTCACCActccaacaaaaaaaactaaaaaagaaaggagaaaaaaaaaagagacgtGGTGACcttaaattgattaaataataataatgattaataataactgtatttattctgttgaatttcatttgttttgcacagcaaAGGCAGCTGCTGGTTTTTGAAGATCAATGTGACGTTAAAAAGCAATTTTTCCGAGAACAAAAGCTGAAACTGGCGCACCATAAGAGTCTTCCGTCTCCGCAAGAGAGCCGGAGAGATATGAAGTACATTCGGAAATATAAGCACTCGATCGTGTGTATAAAGATCCCGAGGTTGACGGGACGGTGTGTagggggg

Function

GO: NA

KEGG:

id description
K04462 MECOM, EVI1, PRDM3; [histone H3]-lysine9 N-methyltransferase (ecotropic virus integration site 1 protein)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71506 lncRNA downstream 135071 38772426 ~ 38773951 (-) True G57194
TU71466 lncRNA downstream 275625 38633112 ~ 38633397 (-) True G57165
TU71435 lncRNA downstream 405893 38501118 ~ 38503129 (-) True G57143
TU71275 lncRNA downstream 775056 38129295 ~ 38133966 (-) True G57011
TU71580 lncRNA upstream 146226 39081421 ~ 39083424 (-) True G57244
TU71700 lncRNA upstream 645416 39580611 ~ 39588074 (-) True G57351
TU71703 lncRNA upstream 653491 39588686 ~ 39588911 (-) True G57354
TU71735 lncRNA upstream 871440 39806635 ~ 39806927 (-) True G57379
TU71768 lncRNA upstream 938776 39873971 ~ 39874229 (-) True G57400
AMCG00009472 mRNA downstream 71428 38827965 ~ 38837594 (-) True AMCG00009472
AMCG00009470 mRNA downstream 88942 38817195 ~ 38820080 (-) True AMCG00009470
AMCG00009471 mRNA downstream 98463 38775558 ~ 38810559 (-) True AMCG00009471
AMCG00009467 mRNA downstream 146092 38754850 ~ 38762930 (-) True AMCG00009467
AMCG00009459 mRNA downstream 427987 38474184 ~ 38481035 (-) True AMCG00009459
AMCG00009476 mRNA upstream 77647 39012842 ~ 39013371 (-) True AMCG00009476
AMCG00009478 mRNA upstream 331001 39266196 ~ 39271483 (-) True AMCG00009478
AMCG00009485 mRNA upstream 370778 39305973 ~ 39308183 (-) True AMCG00009485
AMCG00009487 mRNA upstream 378092 39313287 ~ 39398165 (-) True AMCG00009487
AMCG00009486 mRNA upstream 514522 39449717 ~ 39469293 (-) True AMCG00009486
TU71520 other downstream 71458 38835316 ~ 38837564 (-) False AMCG00009472
TU71449 other downstream 326202 38580285 ~ 38582820 (-) True G57155
TU70990 other downstream 1688946 37215960 ~ 37220076 (-) True G56800
TU70712 other downstream 3036425 35872123 ~ 35872597 (-) True G56568
TU70686 other downstream 3369212 35538887 ~ 35539810 (-) True G56546
TU71924 other upstream 1213530 40148725 ~ 40157471 (-) False AMCG00009521
TU72548 other upstream 3733932 42669127 ~ 42673707 (-) True G58025
TU72928 other upstream 4547226 43482421 ~ 43945297 (-) True G58333
TU73015 other upstream 5054316 43989511 ~ 43995654 (-) True AMCG00009672
TU73231 other upstream 5573058 44508253 ~ 44512249 (-) False AMCG00009697

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000095_02829083_02852606.mRNA True 4870 mRNA 0.48 14 CI01000095 2827729 ~ 2852606 (-)