RNA id: AMCG00009476


Basic Information

Item Value
RNA id AMCG00009476
length 393
RNA type mRNA
GC content 0.54
exon number 2
gene id AMCG00009476
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 39012842 ~ 39013371 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTTATTTTCCTAGGTGATGAAGGAGAGTTTGACCACTTCCCCGATATTGTCTTGGAAGACATGACTGGAGCCGAGAGGGACCTGACCCCCCTATCCCTCTCCGCTCACAACCTGCTGTCCCCCGGCGTGTCCAGTGAGGGTGGCACCCCCAAAGAGGGGTCTCCGTTCCAAGCCCCCATATACATTCCCGATGACCTTCCAGTCCCTCCCGACTTTGAACTACGGGAGTCCAGCATTCCCTCAGCCGGACTGGGGATACGTACCAGGCGAAGAGTACTAGTAGGAGAACGCTTTGGACCTTACGTGGGTGAACAGAAATCTGAACTTAAAGACCGTCGTCTGGGCTGGGAGGTAGGTCCATCTTTTTGGCGTCTCATTCTGTCGATTTGA

Function

GO:

id name namespace
GO:0061337 cardiac conduction biological_process
GO:0060038 cardiac muscle cell proliferation biological_process
GO:0048702 embryonic neurocranium morphogenesis biological_process
GO:0048703 embryonic viscerocranium morphogenesis biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71506 lncRNA downstream 238891 38772426 ~ 38773951 (-) True G57194
TU71466 lncRNA downstream 379445 38633112 ~ 38633397 (-) True G57165
TU71435 lncRNA downstream 509713 38501118 ~ 38503129 (-) True G57143
TU71275 lncRNA downstream 878876 38129295 ~ 38133966 (-) True G57011
TU71580 lncRNA upstream 68050 39081421 ~ 39083424 (-) True G57244
TU71700 lncRNA upstream 567240 39580611 ~ 39588074 (-) True G57351
TU71703 lncRNA upstream 575315 39588686 ~ 39588911 (-) True G57354
TU71735 lncRNA upstream 793264 39806635 ~ 39806927 (-) True G57379
TU71768 lncRNA upstream 860600 39873971 ~ 39874229 (-) True G57400
AMCG00009475 mRNA downstream 77647 38909022 ~ 38935195 (-) True AMCG00009475
AMCG00009472 mRNA downstream 175248 38827965 ~ 38837594 (-) True AMCG00009472
AMCG00009470 mRNA downstream 192762 38817195 ~ 38820080 (-) True AMCG00009470
AMCG00009471 mRNA downstream 202283 38775558 ~ 38810559 (-) True AMCG00009471
AMCG00009467 mRNA downstream 249912 38754850 ~ 38762930 (-) True AMCG00009467
AMCG00009478 mRNA upstream 252825 39266196 ~ 39271483 (-) True AMCG00009478
AMCG00009485 mRNA upstream 292602 39305973 ~ 39308183 (-) True AMCG00009485
AMCG00009487 mRNA upstream 299916 39313287 ~ 39398165 (-) True AMCG00009487
AMCG00009486 mRNA upstream 436346 39449717 ~ 39469293 (-) True AMCG00009486
AMCG00009491 mRNA upstream 503076 39516447 ~ 39520080 (-) True AMCG00009491
TU71520 other downstream 175278 38835316 ~ 38837564 (-) False AMCG00009472
TU71449 other downstream 430022 38580285 ~ 38582820 (-) True G57155
TU70990 other downstream 1792766 37215960 ~ 37220076 (-) True G56800
TU70712 other downstream 3140245 35872123 ~ 35872597 (-) True G56568
TU70688 other downstream 3473032 35538887 ~ 35539810 (-) False G56546
TU71924 other upstream 1135354 40148725 ~ 40157471 (-) False AMCG00009521
TU72548 other upstream 3655756 42669127 ~ 42673707 (-) True G58025
TU72928 other upstream 4469050 43482421 ~ 43945297 (-) True G58333
TU73015 other upstream 4976140 43989511 ~ 43995654 (-) True AMCG00009672
TU73231 other upstream 5494882 44508253 ~ 44512249 (-) False AMCG00009697

Expression Profile