RNA id: AMCG00009485


Basic Information

Item Value
RNA id AMCG00009485
length 927
RNA type mRNA
GC content 0.57
exon number 5
gene id AMCG00009485
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 39305973 ~ 39308183 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGACCACCTGGGCCATCTGGCCACGATGGCCAACCTGGCAGACCCGGACAGAAAGGTGAAGTGGGCTCCTATGGTTTTCAAGGACCTCCAGGGGCCCAAGGGGATCCTGGACCTCCTGGAGACCCCGGCTTCTCCGGAGAGGAGGGGAGTCGTGGTGTGGAAGGTATTTGACAAGTATCTCAGCTTAGTTCATCGTCCTCCCGGGCCAAGGGGCCTCCCAGGGCTGCCGTGCCCAAGGCAGTATAGTTCTGGCTTCTTACTAGTTATGCACAGCCAATCGGAAAGCATCCCCACGTGTCCTCAAGATACGGGCAAATTGTGGGAAGGCTACAGTTTATTGTACCTGGAAGGACAAGAAAAGGCCCATAACCAGGATCTCGGTCTCGCAGGGTCTTGTTTGCCAATGTTCAGCACGATGCCCTTCACGTTCTGCAACATGAACGGAGTGTGTAACTACGCCAGTCGAAATGATAAATCCTACTGGCTGTCCACCACGGCTCCCATTCCCATGATGCCGGTGTCGGGCGAGGAGATTCAGCGCTACATCAGCAGATGCGTGGTGTGCGACGCGTCCGCTGTCGCAGTGGCATTCCACAGCCAGGACTCGATCATCCCCATGTGCCCCAGAGGGTGGCGCAGCCTATGGATGGGCTACTCCTTCTTAATGCACACCGCCGCAGGGGACGAGGGAGGGGGGCAGTCCCTGACGTCGCCGGGGAGCTGCCTGCAGGACTTCCGGACCACACCGTTCATCGAATGCCAAGGCGCCCAGGGAACCTGCCACTACTTTAATAACAAGTACAGCTTCTGGCTCACCGGGATGAAGACACACGAGCAGTTCAGAGACACTCCAGCAGAGACGCTCAAAGAGGAGCATCAGAAGAGGCAGAGGGTCAGCAGATGCCATGTGTGTATGAAGGAGTGA

Function

GO:

id name namespace
GO:0005581 collagen trimer cellular_component
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71580 lncRNA downstream 222549 39081421 ~ 39083424 (-) True G57244
TU71506 lncRNA downstream 532022 38772426 ~ 38773951 (-) True G57194
TU71466 lncRNA downstream 672576 38633112 ~ 38633397 (-) True G57165
TU71435 lncRNA downstream 802844 38501118 ~ 38503129 (-) True G57143
TU71274 lncRNA downstream 1172007 38130081 ~ 38133966 (-) False G57011
TU71700 lncRNA upstream 272428 39580611 ~ 39588074 (-) True G57351
TU71703 lncRNA upstream 280503 39588686 ~ 39588911 (-) True G57354
TU71735 lncRNA upstream 498452 39806635 ~ 39806927 (-) True G57379
TU71768 lncRNA upstream 565788 39873971 ~ 39874229 (-) True G57400
TU71933 lncRNA upstream 851214 40159397 ~ 40159608 (-) True G57524
AMCG00009478 mRNA downstream 34490 39266196 ~ 39271483 (-) True AMCG00009478
AMCG00009476 mRNA downstream 292602 39012842 ~ 39013371 (-) True AMCG00009476
AMCG00009475 mRNA downstream 370778 38909022 ~ 38935195 (-) True AMCG00009475
AMCG00009472 mRNA downstream 468379 38827965 ~ 38837594 (-) True AMCG00009472
AMCG00009470 mRNA downstream 485893 38817195 ~ 38820080 (-) True AMCG00009470
AMCG00009487 mRNA upstream 5104 39313287 ~ 39398165 (-) True AMCG00009487
AMCG00009486 mRNA upstream 141534 39449717 ~ 39469293 (-) True AMCG00009486
AMCG00009491 mRNA upstream 208264 39516447 ~ 39520080 (-) True AMCG00009491
AMCG00009494 mRNA upstream 281685 39589868 ~ 39614413 (-) True AMCG00009494
AMCG00009492 mRNA upstream 338643 39646826 ~ 39654320 (-) True AMCG00009492
TU71520 other downstream 468409 38835316 ~ 38837564 (-) False AMCG00009472
TU71449 other downstream 723153 38580285 ~ 38582820 (-) True G57155
TU70990 other downstream 2085897 37215960 ~ 37220076 (-) True G56800
TU70712 other downstream 3433376 35872123 ~ 35872597 (-) True G56568
TU70688 other downstream 3766163 35538887 ~ 35539810 (-) False G56546
TU71924 other upstream 840542 40148725 ~ 40157471 (-) False AMCG00009521
TU72548 other upstream 3360944 42669127 ~ 42673707 (-) True G58025
TU72928 other upstream 4174238 43482421 ~ 43945297 (-) True G58333
TU73015 other upstream 4681328 43989511 ~ 43995654 (-) True AMCG00009672
TU73231 other upstream 5200070 44508253 ~ 44512249 (-) False AMCG00009697

Expression Profile