RNA id: AMCG00009487


Basic Information

Item Value
RNA id AMCG00009487
length 2970
RNA type mRNA
GC content 0.60
exon number 32
gene id AMCG00009487
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 39313287 ~ 39398165 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGGAGACTTGGCTGAGTACCATCTGGTCCAACTGGCCCAGGATATCCATGATCACCTTTAGGACCTCGATCTCCCGGGATGCCGCCAGGAGCTCCGGGGTATCCCTTGTCTCCTTTGTCTCCTTTGACATCATTTGTGATGGAGCCTGGAAGCCCACGGACACCTTTGGGACCTGCAAGCAGGAGAGCCTTGTAACCCGGAAGGACCAGCGGACCCTGGATTTCCTGGCTGCCCTCGACCTCCTGGATTGCCTTTCTCCCCTTTTCGACCTGGGCATGGCAATGGAAAGGCATAATGACATCAGGAAAAGACCCAATATGACCCTGGGGGCCCAGGAAAACCTTGACCACCTGGAACTCCATCAAGACCCTGAGGTCCAGTTTCCCCTgagcagagaaacacagaagaaCACTTGTGCCAGGAAGTCCTATCAGGCTGTCCAGGATCACCATCCAGTCCTGAGGGTCCGCTCCCCCCTTGGACACCTGGGCCTCGGACCCCTGGGGGCCCATTTACCCCTGGGGGCCCACATTCTCCGGGCACCCCTGGGATCCCAAATCCATGCTCTCCCTTTGGTCCTGATGGTCCAGGCGGTCCCTGAAGTCCACTATCCCCTACTGGCCCGGCAGCCCCATCCTCTCCCATCGGCCCTGGTCTGCCCTGGGGCCCTGAAGGCCCGTACCCCAGGCTGCCCTGAAAGAACATATGGATCCCTGGATGTCATCCAGCCCTGCCTGGAAAGGAACCACGTTCAGGTCGTCCAGGACACCCTGATGAAGAACTGCCTGGGGTTCCTGATTCACGTACTGGCAATCCTGGAAGCCCGGCTGACCCTGGCAGACCCTTCCATCCTGGAGGCCCCGGCAATCCCTGAAACACGCACAATATGTCTGGCCAAATCCCGCAACACAAGAAAACCCCCCAAAGGAGAGCTTGCACTCGGGGTGATGgtcaaaataacaaagcagcagcagcagcagaagaagaagaaggagaagaagaagagcagggccacagacgGAGCATACAGCAGAGAAGAAGCACAACATGGACCACCGGGTGAACTTGGGCTTCGGGGCCCAGTCGGACCCCCAGGCAAAGCAGGCATTCCTGGGTTGCCAGGCGAGAAAGGACAGCGAGGGGACGAGGGGCTGACCGGAACAGCGGGGCAAAAGGGGGACATGGGTTTCCTGGATTTCAAGGAACAGAAGGCATCCctGGCCACCCAGGTTCCGGGGGTCCCAGGGGCCTGCCTGGGCTGGACGGCTGTAATGGATCGCGGGGTGACCCTGGATTTCCTGGGACCCCTGGATTACATGGCTACCCTGGAGTACAAGGTCCACCTGGTATACCTGGCCCAAAAGGGCCTCCGGGTGAACCTGGACACCCCATACCAGGACTACAAGGAAATCCAACACAGGGATTACACTTTGGTGTGTTTTCGACAGGGGGATGTAGGGATGCAAGGAGAACCCGGACCTTTTGAGTATGTGCAGCCCCCTGTGGAGTTTAAGGGAATGAAGGGGTTTGAGGGCGACCTAGGTCCCGAGGGTGCTCCAGGGTACCGTAACGGATTGCCAGgggagagaggagacgTGGGACCCCCTGGCCAACCTGGACCCCTAGGAGATGAGGGTCTCATGGGCATGCCTGGTGAACCAGGACCCAAGGGGTTCTTCACATTTgGACTTACAGGGGATTGTGTTTGTGGACCACCCAAGGACATCCTGGGACCCATTGGTCCTCCGGGGCCTCGAGGCAACCCAGGGCCTCCAGGGTTTTCTGGAAACTCTGGTATAAGGGGGGATATTGGTGACTATGGCCAACCTGGGACACAGGGCACGAGTGTAGGAGAGGTGTTACTGGCCCTCCAGGACCCTCGGGTCCATCAGGAGCCACTGGAAATCCCGGAGAAGATGGCATACCAGGAATCCCTGGTCTCCCGGGACCACTTggtGACAACAACCCAGGATACCCAGGAGATAAGGGCTTTCCTGGGCTCATTGGTAAACGGGGGGCCCCAGGTCCACAGGGGCCTCCAGGGGTTGAAATCATGGGGTCCAATGGCCAGCGTGGGCCACCAGGAGAACAGGGCCCACCAGGAGAAGACGGACTTATGGGAAACAAGGGCCAAATGGGTGACACTTACCCATGTGTACCTAGAATACCAGGCCCAGATGGCCCAAAGGGATTTTCTGGTCAATCAGGACCCCCAGGGAGGCCTGGCGCTCAGGGCTTTCCAGGTCCTCAAGGTGTTGATGGTCCCAGAGGACAGAGAGGCGAACCAGGAGACAGGGGCCCCAATGGGCCTCCAGGTCCACCTGGTTTCAAGGGGCCAACTGGTGAATCCATTCCAGGCAGTCCTGGAGTCAGCGGGCCTATGGGCCTGCCTGGGCTCCCAGGGGTTAAAGGCATCCCTGGGGCACGTGGCCAGCCTGGAGGAGATGGACAAAAAGGAGGTGAAGGAGACCCTGGGCCCAGTGGGCAACCAGGACCACCAGGCTCTTCTCCTGTTCAGTGTGACTCGGGGCCCCCAGGACAGATGGGACCTCCAGGGCTCACCGGGTCATTTGGCCACCCAGGTTTTAGTggtgaaaaaggaaataaaggtGAAGTTGGAGACCCAGGTGGCTTTGACAGAAAGGGAATGCCTGGAAAACCTGGAGCCCCAGGGCCACCAGGAAGTCCCGGGTCCCAGGGCCCTCCTGGACCACTCGGAGAGTCTGGCCAAACCGGATTGCCTGGACAAAAGGGCTATCCTGGCATTCCTGGTCGTCAGGGACCCCCTGGGCAGTCAGGACGACAAGGCGCTCTCGGGCAAAGCGACAAGGGATCGAGCGGTGAAGAGGGGCGGCCTGGTGTTCCTGGACGGCCTGGATCGCCAGGGTTCGAGAGCGGGCCTCCTGGCTCCCCAGGGAGGAATGGAACACCAGGGCCGCCGGGAGCTCCAGGCATTGCAGGGATAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71580 lncRNA downstream 229863 39081421 ~ 39083424 (-) True G57244
TU71506 lncRNA downstream 539336 38772426 ~ 38773951 (-) True G57194
TU71466 lncRNA downstream 679890 38633112 ~ 38633397 (-) True G57165
TU71435 lncRNA downstream 810158 38501118 ~ 38503129 (-) True G57143
TU71274 lncRNA downstream 1179321 38130081 ~ 38133966 (-) False G57011
TU71700 lncRNA upstream 182446 39580611 ~ 39588074 (-) True G57351
TU71703 lncRNA upstream 190521 39588686 ~ 39588911 (-) True G57354
TU71735 lncRNA upstream 408470 39806635 ~ 39806927 (-) True G57379
TU71768 lncRNA upstream 475806 39873971 ~ 39874229 (-) True G57400
TU71933 lncRNA upstream 761232 40159397 ~ 40159608 (-) True G57524
AMCG00009485 mRNA downstream 5104 39305973 ~ 39308183 (-) True AMCG00009485
AMCG00009478 mRNA downstream 41804 39266196 ~ 39271483 (-) True AMCG00009478
AMCG00009476 mRNA downstream 299916 39012842 ~ 39013371 (-) True AMCG00009476
AMCG00009475 mRNA downstream 378092 38909022 ~ 38935195 (-) True AMCG00009475
AMCG00009472 mRNA downstream 475693 38827965 ~ 38837594 (-) True AMCG00009472
AMCG00009486 mRNA upstream 51552 39449717 ~ 39469293 (-) True AMCG00009486
AMCG00009491 mRNA upstream 118282 39516447 ~ 39520080 (-) True AMCG00009491
AMCG00009494 mRNA upstream 191703 39589868 ~ 39614413 (-) True AMCG00009494
AMCG00009492 mRNA upstream 248661 39646826 ~ 39654320 (-) True AMCG00009492
AMCG00009493 mRNA upstream 281753 39679918 ~ 39692549 (-) True AMCG00009493
TU71520 other downstream 475723 38835316 ~ 38837564 (-) False AMCG00009472
TU71449 other downstream 730467 38580285 ~ 38582820 (-) True G57155
TU70990 other downstream 2093211 37215960 ~ 37220076 (-) True G56800
TU70712 other downstream 3440690 35872123 ~ 35872597 (-) True G56568
TU70688 other downstream 3773477 35538887 ~ 35539810 (-) False G56546
TU71924 other upstream 750560 40148725 ~ 40157471 (-) False AMCG00009521
TU72548 other upstream 3270962 42669127 ~ 42673707 (-) True G58025
TU72928 other upstream 4084256 43482421 ~ 43945297 (-) True G58333
TU73015 other upstream 4591346 43989511 ~ 43995654 (-) True AMCG00009672
TU73231 other upstream 5110088 44508253 ~ 44512249 (-) False AMCG00009697

Expression Profile