RNA id: AMCG00009488


Basic Information

Item Value
RNA id AMCG00009488
length 2582
RNA type mRNA
GC content 0.45
exon number 6
gene id AMCG00009488
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 39560727 ~ 39566286 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGGGCTGTTTGGCTCCAGGCTTGGGGCTTTGGGTACCACAGAGCCTCCCAGCAGCACCACTGCAGCATCCCACCGCTGCCAGCATCCTTCCGCCCAGCATCCCTCTCCCACAAGCCACCTGTGCACAGAGACGCGCCGCGGCGAGCCGGCGCTGCCACTGCACCTCGTCGGGAGAGCCAAACAGACCCGTCTAAACACGCAAGCGTCTGCAGGACCCGCACAGCAACGAGTAGTGCCGTTCTGTCCTGCCAAGATCAGTGCTTTGCAGGGGGCCAGGGCTATGGCTGCCCCTATTCCGTCTCGACGTCACAAGACGGTGTTGATGTTTCCAAGGAGACGCTGGTCTCTTTTTGGGCCGCTGGTCTCCTGGACAACCCAGCCTGCCAGCCCGAGCCGCCGCAGCAGGGTCATTTTTATCAGTTGGACTCTGGTTTTCAAAATGACTTCTCGTGGAACGATCACTTGTCACCTCATGTGCAAAGAAATAAgcagCTCCAGGATACATTGTTACAGAAAGAAGAAGAACTGGCGCGGCTACACGACGAGAACAACAAACTGAGAGAATACCTGAACTCTGCTTTCGTCAAAGGCTTGGAAGAGAAAACCAAGaaacttttgcacagcactcAAAGAGCAGATGGAAAACCGAAAAACAAGAAGCGCAGGTCCGAAGAGGAGGGCGGGGGCTTCCATGGATTCACAGCCAGCCAGCTGCTTCCAGGCGCTCACAGGAAGAGGACCCGGAGGAACCTGTCCTTGGAGTTCTGCTCGGCCGAAGAGCTCGCCTGCACCCCTTCTGTGGACTCCTGGGTCCTGCAGACCCTGGGACTAAAAGACGAGGACACGATTGACCACTCAGCTAACTACAGTGCCAATTCAAACGAGGAACACTTACTGCCTCCCAGCGACCCCAGCGCTCTTCAAACTGCCAGTGCGATGGACTACAGCGATGGGATGGCGACAGCATTGGGGTTTTGCCCTGATCTCGGGGCGGGAGTGGACTACACTGCCAGTCTGTGCCGTTTAGACTCACACTGCCTGCTTCAGACGCCCGACCCCACTGTGAGTCACCACACACCCCTGGGGAGCAGTACGGCGCCAGAACCACACCCGTCTCCCTACAGATCGGACATCTCCAGAAATAAAACCGAAGTTGCCTTCACCATGTCCCTGAATCCCCACAGCAACGTGAAGACGCACAGCTTCAACCAGGGACAGGCCTTTGTGCGCAGGGACGAGCAGGGCGGTTGGAAGTTTACGTGGGTCCCCAAACAGTCAGATTAGCTATAACTGTTACTGCCGAACGCAGAACGAAGTCTGTATTGTTTACAAACCTATTAATGCACTTGAATGAGCCCGGGATATTGGTTGAGCTCTTTACGGATGAACAGTACACACAATTTGGAGGgggtatatttgtttttatttatttttatacaatatttatagtCCCAAACCCAAAGGTCTTCCACTTTTTAGACTTCCAATTTGTATCCAATTCTTAAAAAATAGTGCAGCATTTCGTACAAATAAGCAAAACCTGTGCAAGATTAAACTACCTCATAAAATGTGCGTCATACATATCTGTGCATGCCTGCGTCTGTGTGTATGACGAACTGTCCATCTGCAGTTTGTCTTGTTCGTGTACGAGCTCAAAGCGAAACTCATGAAATTGTGCTACATGAATTTAAACAAGCTTTTTGGTTCTGCGATTGCCAAGCTTTTTGACCTGCCAATAATCAAGTATCTGGATGTGCTAGGATCTGTTTCCTCTTCTGCCCGTGAAGTTCCGTTTATTTCAGTTGAAATATTGTGGAGAATTTGCTATTTCACTGCCATTATATCAGAAACGCACTTCTATTGTATTGCCCATCCAGCCTCGTGTTGACTGCATCAAATTAAAGTGCCTGTAAATTACAATCAGAAGCAAAGGAAGTAACAGGGTGTTTTTGTTGCTCCAGTTTTACATTTGCTCTACAATTTCTGACATGATAGGTAATCTGTGTTATTAAACACTAACAGGATAAAGTACTGAAATTGAAAGTAGTATTTGGTTATGTAGGATGTTACATATTACTTACAAATCTGAACAAACTGACAGGAagattgatataaaaaaaacagaacttaCCTTTATCCTGTAGAAACCAAATTTAGACTAACACTACTTTTGTACGCATACATTAAATGGATATTCCccagttgtttttcctttgttttttgatGATCCTTAAATAGGAAAAATTAACCAACATAAAAACTGCCTTTTCTTACTAGAATAACCCAGTGTGCTGTTATGAAATGAACATCAATCGTTCATGTcttggtttatttgttgtttttttaaatctgctgctgttggaatatatattgtttttttaaacaaacaaaaaaatgtctttgGACACTAAAATGTGTAAAGAATAGAAACTCTGTTTTGTACTTAAATCAAAATCACAAAATctaatttaactgtatattttgtcattttgttatcTGTCATAATATATtctaattgtatgtaaaatggttttaattttgtatggctaatggaaaataatttttttaaatgtgttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71673 lncRNA upstream 101051 39459398 ~ 39459676 (+) True G57329
TU71627 lncRNA upstream 253953 39306488 ~ 39306774 (+) True G57287
TU71626 lncRNA upstream 254497 39303337 ~ 39306230 (+) True G57286
TU71480 lncRNA upstream 725782 38757380 ~ 38834945 (+) True G57175
TU71465 lncRNA upstream 927376 38633097 ~ 38633351 (+) True G57164
TU71734 lncRNA downstream 240297 39806583 ~ 39806928 (+) True G57378
TU71769 lncRNA downstream 308595 39874881 ~ 39875170 (+) True G57401
TU71800 lncRNA downstream 374936 39941222 ~ 39943036 (+) True G57428
TU71839 lncRNA downstream 464260 40030546 ~ 40033333 (+) True G57457
TU71932 lncRNA downstream 593123 40159409 ~ 40159626 (+) True G57523
AMCG00009490 mRNA upstream 52223 39505934 ~ 39508504 (+) True AMCG00009490
AMCG00009489 mRNA upstream 57358 39483161 ~ 39503369 (+) True AMCG00009489
AMCG00009480 mRNA upstream 123710 39434956 ~ 39437017 (+) False AMCG00009480
AMCG00009481 mRNA upstream 145131 39409492 ~ 39415596 (+) True AMCG00009481
AMCG00009482 mRNA upstream 155554 39404329 ~ 39405173 (+) True AMCG00009482
AMCG00009496 mRNA downstream 241138 39807424 ~ 39814778 (+) True AMCG00009496
AMCG00009499 mRNA downstream 261020 39827306 ~ 39837637 (+) True AMCG00009499
AMCG00009497 mRNA downstream 272895 39839181 ~ 39843864 (+) True AMCG00009497
AMCG00009495 mRNA downstream 279123 39845409 ~ 39863181 (+) True AMCG00009495
AMCG00009498 mRNA downstream 299442 39865728 ~ 39872722 (+) True AMCG00009498
TU71670 other upstream 123732 39434900 ~ 39436995 (+) True AMCG00009480
TU71381 other upstream 1103135 38442255 ~ 38457592 (+) True G57105
TU71113 other upstream 1944444 37610343 ~ 37616283 (+) False AMCG00009428
TU70945 other upstream 2193056 37360101 ~ 37367671 (+) True AMCG00009405
TU70668 other upstream 4171400 35388914 ~ 35389327 (+) True G56536
TU71802 other downstream 381720 39948006 ~ 39949200 (+) True G57430
TU71881 other downstream 536097 40102383 ~ 40104948 (+) False AMCG00009516
TU72035 other downstream 1424516 40990802 ~ 40994659 (+) True G57604
TU72303 other downstream 2469732 42036018 ~ 42078241 (+) True G57830
TU72919 other downstream 4366666 43932952 ~ 43935762 (+) True G58324

Expression Profile