RNA id: AMCG00009492


Basic Information

Item Value
RNA id AMCG00009492
length 1905
RNA type mRNA
GC content 0.40
exon number 2
gene id AMCG00009492
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 39646826 ~ 39654320 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GATCACAAACACCCATTAAAAATTAAAGCTGAACGCTTGAACAGTGGCACAATAAAGGGTGTTGATTTTGTTGTCACCTtcaccctgtctctgtctgcttcCAACAGGAAATGTTCACGCCGGAGTGTAAATTTAAGGAATCGGTGTTTGAGAACTATTACGTCATCTACTCCTCCACACTGTATCGACAACAGGAGTCTGGCCGGGCTTGGTTCCTGGGTCTCAACAAGGAAGGGCAGATCATGAAAGGAAACCGTGTGAAGAAAACCAAACCTTCATCACATTTTGTACCAAAACCTATTGAAGTTTGCATGTACAGAGAGCCATCACTGCATGAAATCGAAGAGAAACAACGTTCAAGAAAAAGTTCAGGGACCCTGACTATGAACGGAGGCAAAGTTGTGAACCAGGACTCCACATAGCAGGATGCGAATCCCCCCCCAACACGGTGGAATGGACAGGCAGCAATCATCTCCTGCTTTGGATTCCGAACTCGTTCTCAATTTCTTACACATTCTTcaactaaagaaaaagaagaaaagagaaaaaaaaaacgaaaaaaaaactgaattcttGCCTGTGAtgttttagagaaaaaaaaacgacagaaaaatattttaaatcaggactcgaatatacattttatgcaaAAGTCTGCTGTGTGACAACAAGGAAGTTCATCTCTTCATTAcactaataaaatatttcaaagttaCACTACAGAATGTAAGCTTTACCTAATGGGAGCCATACTAgaatttcaattattattattatgattatgattattattatttgcacttCAGATATGATATTTTGAACATCTGATTTGAATCTGCACATCAGCACCGTTCTGAACACGTCAATGTCTGTAAGAATCacctgttttgtttaaaatgagttTGTGGCATTTGTCCTTCTGGTTTGCTATGGGTCGGCTTGGTCGAGTTTTAACAGTTAGTTACCTTAGAAGTAGGCAGAAACTAGAGGGATCTTCATTCCCAACAACTCGCAAAGATCCAGCATGTAACAATTTCAGCAATACTAGCTGTCAAAACTAAAGTTGTAATGTCTTACGGAAATACTCAAAGTTAACAAACACATCTGTTTAGCAATGTGGAGAGGTTAGGCAGCACAAGGGGTAGCACGccatttttgaaagctgttttcCGCAGGATAGAATTGAAATGAGTGTCTCCTTGTGGATTTGCTGATCTTTGGAAACTCAGGAAGAAATGTACTCACGCCAGGATCACGATAGCCATAAAAATGCTTCCTTTGTGCAAACTGCGAAaccattgacattttaaatgctcGTGGTAACAATCAGTGAGCATACAGCTATGGCTCGGGGGGCTACTAGGCCGTCTCCCATATAGTCCTCGGAGATTCAACATATCTCAAGTTACCTTCTGAGCGGAGATCAATCCTCCACTCTCGAGATACTGTAATATTCAAATGTCTTCCATTGGGGAAAGGAAATCAGAGCGGGGATTGTATTTTCCTGTTGGATAGAAAGCCATGTCTGTATCAAACAATCTCTGTATGTCATGCTTGGAGCGTGGAGCAAAACCCCGTAAGAAATGTCCAATAGTTCAGCAGAGGAAAGATACTACAGCAGCTAGTGAGGTGAAATCGCAGGGAATGTGTGCATTTGCCTGAGACTAGATATGCCCGAGACCCTTCGCTAGTTCCACTGAGTTTTTGTCACTGTCAGGTAAGAAGAGTGTTCCCACTTGGACAAGCCTGGATATTCGATTTGTTTTTGCTAACTTTTGcacctttaaaaagaaaaaataaagatatgagTAATCACTTTCATCAATGCATTATGAAAATAAGCAGCAGGATGAAAACTAcataatcattacaaattataataaagtatGGTACCGAAAATTGCAA

Function

GO:

id name namespace
GO:0008543 fibroblast growth factor receptor signaling pathway biological_process
GO:0008083 growth factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71703 lncRNA downstream 57915 39588686 ~ 39588911 (-) True G57354
TU71700 lncRNA downstream 58752 39580611 ~ 39588074 (-) True G57351
TU71580 lncRNA downstream 563402 39081421 ~ 39083424 (-) True G57244
TU71506 lncRNA downstream 872875 38772426 ~ 38773951 (-) True G57194
TU71466 lncRNA downstream 1013429 38633112 ~ 38633397 (-) True G57165
TU71735 lncRNA upstream 152315 39806635 ~ 39806927 (-) True G57379
TU71768 lncRNA upstream 219651 39873971 ~ 39874229 (-) True G57400
TU71933 lncRNA upstream 505077 40159397 ~ 40159608 (-) True G57524
TU71955 lncRNA upstream 685027 40339347 ~ 40343479 (-) True G57545
TU72026 lncRNA upstream 1067111 40721431 ~ 40777084 (-) True G57596
AMCG00009494 mRNA downstream 32413 39589868 ~ 39614413 (-) True AMCG00009494
AMCG00009491 mRNA downstream 126746 39516447 ~ 39520080 (-) True AMCG00009491
AMCG00009486 mRNA downstream 177533 39449717 ~ 39469293 (-) True AMCG00009486
AMCG00009487 mRNA downstream 248661 39313287 ~ 39398165 (-) True AMCG00009487
AMCG00009485 mRNA downstream 338643 39305973 ~ 39308183 (-) True AMCG00009485
AMCG00009493 mRNA upstream 25598 39679918 ~ 39692549 (-) True AMCG00009493
AMCG00009502 mRNA upstream 113340 39767660 ~ 39768919 (-) True AMCG00009502
AMCG00009501 mRNA upstream 165413 39819733 ~ 39827370 (-) True AMCG00009501
AMCG00009500 mRNA upstream 221739 39876059 ~ 39882235 (-) True AMCG00009500
AMCG00009507 mRNA upstream 286892 39941212 ~ 39951534 (-) True AMCG00009507
TU71520 other downstream 809262 38835316 ~ 38837564 (-) False AMCG00009472
TU71449 other downstream 1064006 38580285 ~ 38582820 (-) True G57155
TU70990 other downstream 2426750 37215960 ~ 37220076 (-) True G56800
TU70712 other downstream 3774229 35872123 ~ 35872597 (-) True G56568
TU70688 other downstream 4107016 35538887 ~ 35539810 (-) False G56546
TU71924 other upstream 494405 40148725 ~ 40157471 (-) False AMCG00009521
TU72548 other upstream 3014807 42669127 ~ 42673707 (-) True G58025
TU72928 other upstream 3828101 43482421 ~ 43945297 (-) True G58333
TU73015 other upstream 4335191 43989511 ~ 43995654 (-) True AMCG00009672
TU73231 other upstream 4853933 44508253 ~ 44512249 (-) False AMCG00009697

Expression Profile