RNA id: AMCG00009493


Basic Information

Item Value
RNA id AMCG00009493
length 414
RNA type mRNA
GC content 0.55
exon number 3
gene id AMCG00009493
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 39679918 ~ 39692549 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCAGCGGCAATAGCCAGCTCCCTGATCCGGCAGAAGCGGCAGGCTAGGGAGTCCAACAGCGACCGGGTGTCCACCTCTAAACGGCGCACAAGCCCCAGCAAAGACGGGCGCTCCCTGTGCGAGAGGCATGTTTTAGGGGTTTTCAGCAAAGTGCGTTTCTGCAGCGGCAAGAAAAGACCAGTCCGCCGGAGACCAGaACCCCAGCTCAAAGGTATTGTCACTCGGTTGTTCAGTCAGCAGGGATTTTTCCTGCAGATGCAACCGGATGGCACGATCGACGGGAACAAAGATGAAAACAGCGACTACACCCTCTTTAATCTAATCCCTGTTGGACTGCGTGTGGTAGCGATCCAGGGTGTGAAAGCTGGTCTATACGTGGCGATGAACGGAGAAGGATTCCTCTACAGCTCA

Function

GO:

id name namespace
GO:0008543 fibroblast growth factor receptor signaling pathway biological_process
GO:0008083 growth factor activity molecular_function

KEGG:

id description
K22413 FGF11_12_13, FHF3_1_2; fibroblast growth factor 11/12/13

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71703 lncRNA downstream 91007 39588686 ~ 39588911 (-) True G57354
TU71700 lncRNA downstream 91844 39580611 ~ 39588074 (-) True G57351
TU71580 lncRNA downstream 596494 39081421 ~ 39083424 (-) True G57244
TU71506 lncRNA downstream 905967 38772426 ~ 38773951 (-) True G57194
TU71466 lncRNA downstream 1046521 38633112 ~ 38633397 (-) True G57165
TU71735 lncRNA upstream 114086 39806635 ~ 39806927 (-) True G57379
TU71768 lncRNA upstream 181422 39873971 ~ 39874229 (-) True G57400
TU71933 lncRNA upstream 466848 40159397 ~ 40159608 (-) True G57524
TU71955 lncRNA upstream 646798 40339347 ~ 40343479 (-) True G57545
TU72026 lncRNA upstream 1028882 40721431 ~ 40777084 (-) True G57596
AMCG00009492 mRNA downstream 25598 39646826 ~ 39654320 (-) True AMCG00009492
AMCG00009494 mRNA downstream 65505 39589868 ~ 39614413 (-) True AMCG00009494
AMCG00009491 mRNA downstream 159838 39516447 ~ 39520080 (-) True AMCG00009491
AMCG00009486 mRNA downstream 210625 39449717 ~ 39469293 (-) True AMCG00009486
AMCG00009487 mRNA downstream 281753 39313287 ~ 39398165 (-) True AMCG00009487
AMCG00009502 mRNA upstream 75111 39767660 ~ 39768919 (-) True AMCG00009502
AMCG00009501 mRNA upstream 127184 39819733 ~ 39827370 (-) True AMCG00009501
AMCG00009500 mRNA upstream 183510 39876059 ~ 39882235 (-) True AMCG00009500
AMCG00009507 mRNA upstream 248663 39941212 ~ 39951534 (-) True AMCG00009507
AMCG00009508 mRNA upstream 260868 39953417 ~ 39965123 (-) True AMCG00009508
TU71520 other downstream 842354 38835316 ~ 38837564 (-) False AMCG00009472
TU71449 other downstream 1097098 38580285 ~ 38582820 (-) True G57155
TU70990 other downstream 2459842 37215960 ~ 37220076 (-) True G56800
TU70712 other downstream 3807321 35872123 ~ 35872597 (-) True G56568
TU70688 other downstream 4140108 35538887 ~ 35539810 (-) False G56546
TU71924 other upstream 456176 40148725 ~ 40157471 (-) False AMCG00009521
TU72548 other upstream 2976578 42669127 ~ 42673707 (-) True G58025
TU72928 other upstream 3789872 43482421 ~ 43945297 (-) True G58333
TU73015 other upstream 4296962 43989511 ~ 43995654 (-) True AMCG00009672
TU73231 other upstream 4815704 44508253 ~ 44512249 (-) False AMCG00009697

Expression Profile