RNA id: AMCG00009494


Basic Information

Item Value
RNA id AMCG00009494
length 3115
RNA type mRNA
GC content 0.44
exon number 13
gene id AMCG00009494
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 39589868 ~ 39614413 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atggtctcTGAGGAACTCGAGGGCTTCAACAAAACGCAACCCCGAgaggagagtttgttccagctGACAGAAACTTTCAAAGGCAGGCAGGGAGAGGCGGTCCTCAGCTGCTGGTGCCTGGCAGAGATGTCTAATGTCCAGCCTCCAGCTTGTCACCACCTGGATGCTCCTGGATTGAATAGCCCGGCAGCACCGACGCTGAGAGCCAGGAGGAGAGGGCATCTCATCTCAGCCGAGGAAATGGGGCTGTTTTGGTTCATGTTGCCTTTACTGTTTGCCGTGCCTGAAGCCATCCCGAGCGGTACTTCAGAGCCAGGCCAGCGACATCCATCAGATCACTGCCACGACTGGGGCATCTTTTTGGAGACGGTGCAGGTTTATGACGGCGAAGCCGGGATACTGAAATGCCCCCTGTTCTCCGAGAAGGGGAGGTACAACTACAGCTCGGCCCAGGCGGCAGGGCTCACCTTGGTGTGGTACTGGATAAGGGACGGCCAAGACCTGGAGAAGCCCATTGATTTCCGACTCCAAAGGATCAGCAAATTGAAGGAGAGGCTCTGGTTCCAGCCTGCTGTATTAAACGACACGGGGAATTATATCTGCATGCTGAGAAACTCAACCTACTGCTTTAAGGTGATGGTGCCTCTCATCGTTCTTCAGAAAGACCCTGGCACATGCATCAATGCCCGTTTCAAGAGCGTCATGAAAACCGCCCCTATTGAAAAAATCGTGGAGCTTGTCTGTCCTGATTTCGAAGACTTCCTGCCAACACCACACAGTTACACTGTCAATTGGTACTACAACTGTGTCAATAACTTCGGACCGGCTGGGTTTACTGATCGGGAAGTGAAGGGCAATAAAGTTATCATTTACATCATGAGAGAAGCTTACGCTGGGAACTACACCTGTGTGGTGAACTACACAGTCAATGGGAAGCCGGCCACTCTGACTCGGACCATAACCGTCAAGGTCGTGGgtcGAGATCATAAAGAATTGCCGATGATACATAACCCAAATGAGAACGAGGAAAATATTGTGACGCttgGTGAGGATCTGGACTTGACCTGCCGTGTACAGTTTTACTATATGGAAGACTCTGACTCTGAAGTTTGGTGGTCTTTAAATGGGAAGAAAGTGGAGCCATATACAAACACCCGATTTCGAATTATTTCAAGCACGACTGAAAATTTGGAATACAACATTATAGTAAAGACCCTGCGCATTGAGAAGTTTAATTCGGGCGACCTGAAGGGAGACTTCACATCCTATGTGCCGTCTGTGGAGCTGGGATGCGGCCTTGGTTTCATCTTATTCCTGATGATTGTGTTAATCGTCGTGTATCACGTATACTGGCTGGAGTTGGTGCTGCTCTACCGCGCTCACTTCGGCACGGACGAATCCCTGGCGGATGGGAAGGAAtatgacatttacatttcttatgCGAGGAACACAGAAGAGGAAGAGTTCGTCCTCCTCACCCTGCGCGAGGTCCTCGAGAACGACTTGGGCTATAAAGTGTGCATCTTTGACCGAGACAGCCTGCCTGGGGGGACCATCACGGATGAGACACTGAGTTTCATTTGGAGAAGCCGGCGTGTGATCATTGTGCTGAGTCCAAATTACGTCCTGCAGGGGACCCAGGCCCTGCTGGAGCTCAAAGCTGGGATCCATAACATGGCGCTGGCCGGGAACCTGCGTGTCATCCTAGTGCAGTATAAGCCCGTGAAAAAGGTTGACTATGTGAAAGAGCTGAAGCGAGCTCGCGTGGCTCTGACGCTCATCAGGTGGAACGGGGAGAAATCCAAAGACCTGTCCGCTAGGTTCTGGAAACAACTGCAAGTACAGCTTCCCACGAAGAAGATCAGAGACTCGGCTGATTGTTCACGGTGCAGTCAGAGGCTGCTGAAGGAATCGTCCCCAACGTTATGGAACAGAAAAAGTGGAAACACGCATTAGAAAGACTGCCAAGAGAGCATTAGCACACAAAGCAGCTGTACAGAATACATTCAGAATATAGAGGACagatctgtattttaatttgtgcgTATTAGATAGTCTTGAACATTGCTCTGACGTGATTCAGTTAACTGATTCAATACAGCACATTATGACTTCCACAGTCTTACAGTTATTGAAATTCCAAACCTTTTCTTCCAAATgggtttttaacattttaaacttttgtttctttataatgtCCTTACATAGCCCAAATGAGTTATGCTACTTTTTTAAATAGGATGTGAAATAGCATactctgatttgtttttattacttgaCGGACATAAAACTGTATGTTCCACCACAGTTTGGGTCAGAAACATTTTTGAGACCAGAAAGACAGTTGAATTTGCAGGTTCAGGTGCATAACATTATATCATTATCATAGCAACATTTTAGTGTGCAAAATGGATTCCAAcctattttatttgtgttttcccaTTTTACATGCATTTCCATGAAGCTGTGATGTAAAGATGTgtatcatatatattatatatatattaaaatgttgtccCAAAAATATGGAATTATTTATCTTCATGTTGTCTTTTTGTAATGAGCTATTCAGGGCAGTAACTGTCTTATTACTACAAATTgagtatatttttgtattttattattatatactaaATTATATAGAGAGATTGAGAGATGGAGTatcttaatataaaacacacacactgtatttttacactggACCAAAATTGATGTCCTGGCCCTTGAATCAGCACATTCCTGAAGTCCATATTACTGTTCATCTCAAAGCTATCTCACTTTATTAAAACAGATCAATTTCAGTGGAAATTAGATGAAGCTTTCAGCTCCCGTgagacaagaaaataaaattgatttccAGGTTTTCTCCAGCTTCTCTATAATTCAGCCATACATGTCTGGATGTGGCTATTGATGGTTATCTTTTCTGAGgtacaattttttaaatgacttgaaTCAAGTCATCAGGAATGGCACGTGTTACACTTTAAGCATTTCAGTTGCATGACATCCGAAACCACTTTTAATTTCATCCGCCCTGTGTCCGTTTTGTTTGGTGGTTTGGTTCTCTTCTCATGTATGTGATTTTTGCACAATAAACAcgatttttaatttt

Function

GO: NA

KEGG:

id description
K04723 IL1RAP; interleukin 1 receptor accessory protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71703 lncRNA downstream 957 39588686 ~ 39588911 (-) True G57354
TU71700 lncRNA downstream 1794 39580611 ~ 39588074 (-) True G57351
TU71580 lncRNA downstream 506444 39081421 ~ 39083424 (-) True G57244
TU71506 lncRNA downstream 815917 38772426 ~ 38773951 (-) True G57194
TU71466 lncRNA downstream 956471 38633112 ~ 38633397 (-) True G57165
TU71735 lncRNA upstream 192222 39806635 ~ 39806927 (-) True G57379
TU71768 lncRNA upstream 259558 39873971 ~ 39874229 (-) True G57400
TU71933 lncRNA upstream 544984 40159397 ~ 40159608 (-) True G57524
TU71955 lncRNA upstream 724934 40339347 ~ 40343479 (-) True G57545
TU72026 lncRNA upstream 1107018 40721431 ~ 40777084 (-) True G57596
AMCG00009491 mRNA downstream 69788 39516447 ~ 39520080 (-) True AMCG00009491
AMCG00009486 mRNA downstream 120575 39449717 ~ 39469293 (-) True AMCG00009486
AMCG00009487 mRNA downstream 191703 39313287 ~ 39398165 (-) True AMCG00009487
AMCG00009485 mRNA downstream 281685 39305973 ~ 39308183 (-) True AMCG00009485
AMCG00009478 mRNA downstream 318385 39266196 ~ 39271483 (-) True AMCG00009478
AMCG00009492 mRNA upstream 32413 39646826 ~ 39654320 (-) True AMCG00009492
AMCG00009493 mRNA upstream 65505 39679918 ~ 39692549 (-) True AMCG00009493
AMCG00009502 mRNA upstream 153247 39767660 ~ 39768919 (-) True AMCG00009502
AMCG00009501 mRNA upstream 205320 39819733 ~ 39827370 (-) True AMCG00009501
AMCG00009500 mRNA upstream 261646 39876059 ~ 39882235 (-) True AMCG00009500
TU71520 other downstream 752304 38835316 ~ 38837564 (-) False AMCG00009472
TU71449 other downstream 1007048 38580285 ~ 38582820 (-) True G57155
TU70990 other downstream 2369792 37215960 ~ 37220076 (-) True G56800
TU70712 other downstream 3717271 35872123 ~ 35872597 (-) True G56568
TU70688 other downstream 4050058 35538887 ~ 35539810 (-) False G56546
TU71924 other upstream 534312 40148725 ~ 40157471 (-) False AMCG00009521
TU72548 other upstream 3054714 42669127 ~ 42673707 (-) True G58025
TU72928 other upstream 3868008 43482421 ~ 43945297 (-) True G58333
TU73015 other upstream 4375098 43989511 ~ 43995654 (-) True AMCG00009672
TU73231 other upstream 4893840 44508253 ~ 44512249 (-) False AMCG00009697

Expression Profile