RNA id: AMCG00009497


Basic Information

Item Value
RNA id AMCG00009497
length 1876
RNA type mRNA
GC content 0.40
exon number 5
gene id AMCG00009497
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 39839181 ~ 39843864 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTATATTATAAAAAGCTCCATCAGAAAGGGGACTTCTTATCATTTTATAGCGTCTAAGCAAGAACAAAGTTCCCTCAGAGCTACGAGGAGACAATTGAAGACAGGAGGGCAGACGTTGTGGATCAGGAAGGGAAGTTACGGCTGTGGCTGTGGATTTGATCTCGCTTCACTTTGTGTTTGGCTatttgctttggttttaaaTTTGCTGGAATTACTGAGGTCTGATCATGTCGACTGCGATAGAAGTGATGGGATTATTGCTGTGTCTGGGCGGCTTGCTCATCACCGGGGCCTCTCTAGCCAACGACAGCTGGAAAGTGAACAGTAATTATGACACTGTCTTAACCTCCAGCCAGCAGTATGAAAACCTATGGAGGACCTGTCTCTCGGACAGCAGGGGCATCATCAACTGCAAAACCTTCGAGTCCTTGCTGGCCCTGCCTGccTATATACAAGCATGCCGGGCTCTGATGATCGTCTCTTTGCTGATTGGGGTGATGGGTATCATCGCAGCACTGATGGGCCAGAAGTGCACTAAGATTGGCAGTGCCAACAACCAGACCAAGGGCAAGATCGCCTTGATGGGCGGGATCTGTTTCATCTTTGCAGGACTGAGCTCCCTGGCAGCTGTCTCCTGGTATGCCAACCAAATTATTCAAGAGTTCTACAACCCTTTCAATGGGGGCACCAAGTTTGAGCTTGGTGTGGGTCTGTACATTGGCTGGGGGGGtgcctttctttccattttggGGGGCGCCTTACTCTGCTGCTCCTGTAGAAACTCTGGAACCGCCCCCAAAAGgaCATACAATTACGACTACTCAGCGGCTGGCAGCACCAACCAGCAGAAGATCTACAAAGCCCCCCCTTCAGAGTCCTCTAAAGCCTATGTTTGAGCCGATTCTCCTTGtcccttgtttttgttgtcaatGATGATGTTAGTATATTCTTCAGGTTTTTTTACGCCACATTTGAAagtcaattatttgtattcaaataatttCCATGTAAACGTAAATCATTGTTTCTATTTCAAATAAAAGGAGAAATTATAAACTtaaagaagatgaagaagaataTGAGTTAGCTTGGGACCATAATTAGCTGGtacttaatttgtaattttaataaaatatggttTGCTATCTTTTCTTTTGGGGTGTGTCAATGTCTGCTTATATAGAACGTAATAatgtacatgaataaataaaaccaaaaactgaaagagagaaatatcaaagtaagaaagaaaaatgtaaaacaatacatattcctTCTGGAAAACAGGAACATTAGTAAATATGAAGAGTTCTGTACAATACTTCAGCTGAATGCTGCCTTCTTGTGGAAGCTGCCCAGAGGTTTTATAGATGTCGTCAATCATTGCCTAAAACTGAACTAATCGTAACAGATTAAGCCAGTAACCAGAGTGACCAGAGTGATAGCCTTACAGGCAATATCTCAGGTATGCTCTACAAACAACTGACAATAAGTTTAGTATCTTGCAGAGAGACAAAAGTAgtatattactattaatatacAGGACTACAAATGTGTTGTAGGGGACACACATTTATCCGAAGAACCAACGTGCATCCATATTATTGCAAAAATACTTgtcatacattattatttacatcgtttttttctgtctaatcTGTTGCTCTAGATTAATCTAGAAACCTAATGACTAGCTTCGACCTAATATACACAACtgtaatatactataatatgtaatattttattgtactaGCCTATAAGATGTTGTACTGCATTGTGATGCACTGTCCTATAATACACTGCATTGTAATTTACTACAGACTATTATAAATAAAGtcctgtattgtgttgtatgtCAAAATGCCTATattttat

Function

GO:

id name namespace
GO:0030054 cell junction cellular_component
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71734 lncRNA upstream 32253 39806583 ~ 39806928 (+) True G57378
TU71673 lncRNA upstream 379505 39459398 ~ 39459676 (+) True G57329
TU71627 lncRNA upstream 532407 39306488 ~ 39306774 (+) True G57287
TU71626 lncRNA upstream 532951 39303337 ~ 39306230 (+) True G57286
TU71480 lncRNA upstream 1004236 38757380 ~ 38834945 (+) True G57175
TU71769 lncRNA downstream 31017 39874881 ~ 39875170 (+) True G57401
TU71800 lncRNA downstream 97358 39941222 ~ 39943036 (+) True G57428
TU71839 lncRNA downstream 186682 40030546 ~ 40033333 (+) True G57457
TU71932 lncRNA downstream 315545 40159409 ~ 40159626 (+) True G57523
TU71954 lncRNA downstream 495518 40339382 ~ 40343381 (+) True G57544
AMCG00009499 mRNA upstream 1544 39827306 ~ 39837637 (+) True AMCG00009499
AMCG00009496 mRNA upstream 24403 39807424 ~ 39814778 (+) True AMCG00009496
AMCG00009488 mRNA upstream 272895 39560727 ~ 39566286 (+) True AMCG00009488
AMCG00009490 mRNA upstream 330677 39505934 ~ 39508504 (+) True AMCG00009490
AMCG00009489 mRNA upstream 335812 39483161 ~ 39503369 (+) True AMCG00009489
AMCG00009495 mRNA downstream 1545 39845409 ~ 39863181 (+) True AMCG00009495
AMCG00009498 mRNA downstream 21864 39865728 ~ 39872722 (+) True AMCG00009498
AMCG00009504 mRNA downstream 40138 39884002 ~ 39922108 (+) True AMCG00009504
AMCG00009506 mRNA downstream 79070 39922934 ~ 39930133 (+) True AMCG00009506
AMCG00009505 mRNA downstream 86282 39930146 ~ 39938281 (+) True AMCG00009505
TU71670 other upstream 402186 39434900 ~ 39436995 (+) True AMCG00009480
TU71381 other upstream 1381589 38442255 ~ 38457592 (+) True G57105
TU71113 other upstream 2222898 37610343 ~ 37616283 (+) False AMCG00009428
TU70945 other upstream 2471510 37360101 ~ 37367671 (+) True AMCG00009405
TU70668 other upstream 4449854 35388914 ~ 35389327 (+) True G56536
TU71802 other downstream 104142 39948006 ~ 39949200 (+) True G57430
TU71881 other downstream 258519 40102383 ~ 40104948 (+) False AMCG00009516
TU72035 other downstream 1146938 40990802 ~ 40994659 (+) True G57604
TU72303 other downstream 2192154 42036018 ~ 42078241 (+) True G57830
TU72919 other downstream 4089088 43932952 ~ 43935762 (+) True G58324

Expression Profile