RNA id: AMCG00009500


Basic Information

Item Value
RNA id AMCG00009500
length 1617
RNA type mRNA
GC content 0.59
exon number 6
gene id AMCG00009500
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 39876059 ~ 39882235 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTGACAATGAAGAGCCAATGCTTCATGCTGTGCGTGCCGCTCCTGTTGTCTCTGTGCGGAGCCCACGCCTCGCCCGTTACGGTGGAGGAAGACATTGAAGAGTATACAACCCTGCCTCTGACAACCCCACCAAATGACCAAACACTGTACCCCCCAGGGGACCATCATGCCAGTGCCACTCCTGCCGGGCCAATTTACCCACCAGGAGACCATCATCCCAATCCCACTCCTGCCTGGCCAATTTACCCACCAGGGGACAACTACCCCTTGAAGGAAACGAATTCAACCGAACCAGGTCGACGATCCTTTGAGCCTGGTTTGGAACCCGATATGTCCGAATGTTACGATCTGTTGGGATCAGCCAACCCTTCGCCCACTGGCAACTTCCCCTGGCACTGCCTGTGCATGAACTGCGAGGGCGCAGCCGCCCAGGCAGCACAGGCCCAAGGGGGTTCATGGGATTTCGAGCCAGGATTCGTTGGCCGGCAGGGGCTGAAAGGGCAGAAAGGGGAGGATGGACTGAAGGGAGATCAGGGAGAGAGGGGTTTCCTTGGGGCAAAGGGAGTTCAGGGGCTGAAGGGTGACAAGGGGGACCAGGGTTTGGATGGGATGCCAGGGCAGCCGGGTCCCCAGGGCAATGATGGTCAGTGCCCTGCGGTGTGTGAGAGTGCGCCAGGACCCCCGGGTCAGACTGGGCTGCCGGGGCCTGTGGGTCTGAGGGGGGTGCCTGGGGCAGACGGGGTGCCTGGGCTGCATGGGGAGAAGGGGGACACAGGTGCAGTGGGACCCCCTGGACCGTTGGGCCCGCAGGGGCCTAAAGGGGATCAGGGGGAGGAGGGCGTGTGCAACTGTCATGATGGAGAGAAGGGGGCACAAGGAATGCCAGGGCCACAGGGTCCCAAGGGGGATGAGGGAATACCTGGTACTAATGGGATGGCAGGGGAGCCTGGGGCCAAGGGGGATAAAGGAGAAGAGGGGTTGATAGGAGTGCCAGGGCCCTGCTCCCCAACCATCCAGTCTGCCTTCTCGGCCAGCCTTAAGTCCTTGAACCCGGTGCCTAACCTTCCAGTGCCCTTCAGTGACATCTTGTACAACCTGCAAGGCAATTTCAACCCTTTTGACGGCACCTACACAGCACCAGCCAATGGCACATATGTTTTTAGCTACCAGCTGGTTGCCTTCGCCAAGTTGCTCAAAGTTGGGCTTTTCCTGAACTTTAGACCAGTGGTGAAGACCATAGAGCCCACTGATTTCAGCACGACCTCCCAGTTGGTAGTCCTCCACCTGAGTGCTGGCGACCGCGTCTGGATACAGGTGAAGGACGTCAACAGTAACGGCATGTATGCCAGCAACGAGTGCAGCAGCACCTTCAGTGGCTACCTGCTGTACCCCGACTCCTGCGACCAGTCCGTGTCTCGCGACTTCGTGGCCCCAGTAGAGGGCACGTACAGTTGGGGCGACGAGGAAGAACAGCCCCCCACGAGCCCCACAGAGTCCACGGAATCCACGGAATCCACGGAATCCACGGAATCCACAGAACCCCCGGGCTCCATGGAATCCACAGAATCCCCGGGCTCCATGGAATCCACTGAATTCACGACCGCAATGCCATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71768 lncRNA downstream 1830 39873971 ~ 39874229 (-) True G57400
TU71735 lncRNA downstream 69132 39806635 ~ 39806927 (-) True G57379
TU71703 lncRNA downstream 287148 39588686 ~ 39588911 (-) True G57354
TU71700 lncRNA downstream 287985 39580611 ~ 39588074 (-) True G57351
TU71580 lncRNA downstream 792635 39081421 ~ 39083424 (-) True G57244
TU71933 lncRNA upstream 277162 40159397 ~ 40159608 (-) True G57524
TU71955 lncRNA upstream 457112 40339347 ~ 40343479 (-) True G57545
TU72026 lncRNA upstream 839196 40721431 ~ 40777084 (-) True G57596
TU72031 lncRNA upstream 1050730 40932965 ~ 40933210 (-) True G57600
TU72239 lncRNA upstream 1932366 41814601 ~ 41815807 (-) False AMCG00009571
AMCG00009501 mRNA downstream 48689 39819733 ~ 39827370 (-) True AMCG00009501
AMCG00009502 mRNA downstream 107140 39767660 ~ 39768919 (-) True AMCG00009502
AMCG00009493 mRNA downstream 183510 39679918 ~ 39692549 (-) True AMCG00009493
AMCG00009492 mRNA downstream 221739 39646826 ~ 39654320 (-) True AMCG00009492
AMCG00009494 mRNA downstream 261646 39589868 ~ 39614413 (-) True AMCG00009494
AMCG00009507 mRNA upstream 58977 39941212 ~ 39951534 (-) True AMCG00009507
AMCG00009508 mRNA upstream 71182 39953417 ~ 39965123 (-) True AMCG00009508
AMCG00009513 mRNA upstream 104505 39986740 ~ 39996178 (-) True AMCG00009513
AMCG00009511 mRNA upstream 118828 40001063 ~ 40004644 (-) True AMCG00009511
AMCG00009523 mRNA upstream 144433 40026668 ~ 40027183 (-) True AMCG00009523
TU71520 other downstream 1038495 38835316 ~ 38837564 (-) False AMCG00009472
TU71449 other downstream 1293239 38580285 ~ 38582820 (-) True G57155
TU70990 other downstream 2655983 37215960 ~ 37220076 (-) True G56800
TU70712 other downstream 4003462 35872123 ~ 35872597 (-) True G56568
TU70688 other downstream 4336249 35538887 ~ 35539810 (-) False G56546
TU71924 other upstream 266490 40148725 ~ 40157471 (-) False AMCG00009521
TU72548 other upstream 2786892 42669127 ~ 42673707 (-) True G58025
TU72928 other upstream 3600186 43482421 ~ 43945297 (-) True G58333
TU73015 other upstream 4107276 43989511 ~ 43995654 (-) True AMCG00009672
TU73231 other upstream 4626018 44508253 ~ 44512249 (-) False AMCG00009697

Expression Profile