RNA id: AMCG00009505


Basic Information

Item Value
RNA id AMCG00009505
length 1536
RNA type mRNA
GC content 0.57
exon number 8
gene id AMCG00009505
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 39930146 ~ 39938281 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGCTCCTTTAGCTGGATTCCCATTaagaagaaagaaacatgtTGCCACCGTCTCTCTTCCTCGCCGCTCTCTCGCTCCTCTGCCTCGGAACGGTCTCTGCAGTCTCCGGAGATGTACCCCGGGAACCTGGAGCGGGAGTGTTACGAGGAGACCTGCAATTTTGAGGAGGCCAACGAGATCTTCCAGACCAAGGAGAAAACGAACCCCTGTCTGAATGGAGGGATTTGCAGCTTCACTAATCAGAATTACATGTGTCTCTGCCCGCCCCGCTTTGACGGCTACAGGTGTGAGACAGAGATCTTCGAGTGCCAGTATAAGAACGGGGGCTGCCAGCAGTACTGCACGAACCGGTTCCGCACCGTCAGCGTGCAGTGCAGCTGGAACAACTTCCGCTCCCTTCTGGATGAGGAGGACTTTATGGACGACACCATGCTGTCACTCAACAACACGCTGTCAGGCAACGACACACTGTCACTCAACAACACGCTGTCACTCAACGACACTCTGTCGCCTGACAATGTCACAGACAGCCCCACCCCCGAGCTCCCGGGCAGCGACAACAGTGACGTCCGCATTGTGGGTGGAGACTTGGAGGTGCAGGGCGGGAGTCCCTGGCAAGTTCTGGTCCACAGGAAGGATGGCTATGGGTTCTGTGGGGGGTCTCTGATCACAGAGCGCTGGGTGGTCAGCGCCGCACACTGCTTCGATGGAAAACCTGACCATGTGACCTTGGGGAACTATGACAAGTTCGTGCGGAACCAGGACGAGCAGAAGATCGCGGTGCAGGCGCTGGTGGTGCACCCCCACTACCACGCTGACACCTACGACAGCGACAtcgcgctgctgctgctggccaGGCCCGCCATGCTGGGGCCCTACACCTCGCCCATCTGCCTGCCCAACGGCAACCTGGCCCGACTGCTGCTGCAGGACGACGTCATGGGCACGGTGAGCGGCTGGGGCTCCACGCGGCACCTGGGGCCCTCCTCCCGCTTCCTGCGCAAGGTGCGGCTACCCGTGGTCAACCAGCAGAAGTGCATGAGCTCCACAGCCCAGGTCGTCACCGACAATATGTTCTGTGCCGGCTATGCCGACGTGGCGCGGGACTCCTGCAAGGGCGACAGCGGCGGCCCCTTCGCCAGCCTTTACCAGGGCACCTGGTTCCTGACAGGCGTGGTGAGCTGGGGCGAGGAGTGCGCCGCTAAGGGCAAATATGGCGTCTACACCCGTGTGGACAACTTCCTGCCCTGGATCCAGGATACAGTGGCCTCAACGGCAGCGTCACTTAAATAACAGACCGGAGCCATCGCCCGAGGCCACTGGGGAACGCCAGGCTTCACCACAAACGTCCAGGATGCCTTCAGTGCCTGTTGCTGTTCTCAGAGTGTAATCTATATACATCTGTTCCGGGTTATGATTGTATATGTAGAgagcattttatatattttttaattgcatcgCACATACAagttgaattatatatataatatatatacactcacctaaaggattattaggaacacctgttcaatt

Function

GO:

id name namespace
GO:0003824 catalytic activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71769 lncRNA upstream 54976 39874881 ~ 39875170 (+) True G57401
TU71734 lncRNA upstream 123218 39806583 ~ 39806928 (+) True G57378
TU71673 lncRNA upstream 470470 39459398 ~ 39459676 (+) True G57329
TU71627 lncRNA upstream 623372 39306488 ~ 39306774 (+) True G57287
TU71626 lncRNA upstream 623916 39303337 ~ 39306230 (+) True G57286
TU71800 lncRNA downstream 2941 39941222 ~ 39943036 (+) True G57428
TU71839 lncRNA downstream 92265 40030546 ~ 40033333 (+) True G57457
TU71932 lncRNA downstream 221128 40159409 ~ 40159626 (+) True G57523
TU71954 lncRNA downstream 401101 40339382 ~ 40343381 (+) True G57544
TU72028 lncRNA downstream 890791 40829072 ~ 40829677 (+) True G57597
AMCG00009506 mRNA upstream 13 39922934 ~ 39930133 (+) True AMCG00009506
AMCG00009504 mRNA upstream 8038 39884002 ~ 39922108 (+) True AMCG00009504
AMCG00009498 mRNA upstream 57424 39865728 ~ 39872722 (+) True AMCG00009498
AMCG00009495 mRNA upstream 66965 39845409 ~ 39863181 (+) True AMCG00009495
AMCG00009497 mRNA upstream 86282 39839181 ~ 39843864 (+) True AMCG00009497
AMCG00009503 mRNA downstream 29016 39967297 ~ 39982047 (+) True AMCG00009503
AMCG00009510 mRNA downstream 83800 40022081 ~ 40025439 (+) True AMCG00009510
AMCG00009512 mRNA downstream 90511 40028792 ~ 40029460 (+) True AMCG00009512
AMCG00009509 mRNA downstream 132958 40071239 ~ 40072287 (+) True AMCG00009509
AMCG00009516 mRNA downstream 148193 40086474 ~ 40105052 (+) True AMCG00009516
TU71670 other upstream 493151 39434900 ~ 39436995 (+) True AMCG00009480
TU71381 other upstream 1472554 38442255 ~ 38457592 (+) True G57105
TU71113 other upstream 2313863 37610343 ~ 37616283 (+) False AMCG00009428
TU70945 other upstream 2562475 37360101 ~ 37367671 (+) True AMCG00009405
TU70668 other upstream 4540819 35388914 ~ 35389327 (+) True G56536
TU71802 other downstream 9725 39948006 ~ 39949200 (+) True G57430
TU71881 other downstream 164102 40102383 ~ 40104948 (+) False AMCG00009516
TU72035 other downstream 1052521 40990802 ~ 40994659 (+) True G57604
TU72303 other downstream 2097737 42036018 ~ 42078241 (+) True G57830
TU72919 other downstream 3994671 43932952 ~ 43935762 (+) True G58324

Expression Profile