RNA id: AMCG00009507


Basic Information

Item Value
RNA id AMCG00009507
length 4047
RNA type mRNA
GC content 0.51
exon number 15
gene id AMCG00009507
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 39941212 ~ 39951534 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTAGCATAGCGAGAAAGCGGGTATTAAAAGCCGGGGAAGAGAAGTGAATTACGTGATGCATTACGAATACCATTCTTGTTCGTATGTGTAATTTATTACAGTAGCGCAATAAACGATAAATGCATCCAGGCGGCCGGAGTTAGCAAAACTACCATTGGAGGCCGCAGCTGTATCCAGGCAAGCCGAAGAGGGACCAGCGCTCGAACGACGAGCTTAACCGGGCTGGGAGCTTGTAGGAAAACCCGCTGCTTTTTGGTTTCATTGTGCGTCTTGAGATAAACGCACCGTGTGGAGGCAGGTGCCCCATTTAGAGACATCGTCCGCACGggacagcagggcagggggacGGGGCGGCTGTTTCCGTagtacataatttaatttaaaaaaagacacgATGGACGGAGATGACGACGATTTCTTCTCCGGAAGCCACTCAGATGATGGTGGGGCCACTCCAGTTCAGGACGAGCACGGCCTGGCATCCGACGCAGAAGAGGGGGCTAAAGGTCACCAGTCCGACTCGGAGGCAGGCAGCGTGGAGCGGCACTCTGAGGATGAGCAGAGCGATGCAGAAGGTGACGGCCCCTCCGCTCAGAGGAACGGCCTAGCCAGCGATTCTGAAAACGAGGATGCACCCCAGGCAAGGGACAGCGACTCCGAAAAGGAGGACGATGCACCCCCACAGCACGACAGCGACTCGGACGGAGAGGAGGCTCCCAAACGTGCAGATAGCGACTCCGAGGCAGAGGACGCTCCCAAACCCACAGGCGGCCACTCGGACAACGAGGAGGAGCCGAGCAAGCAGGCCAGTGACTCTGAGAACGAGGAGGAGCCCAAACGCCGGGGCAGTGACTCTGAGAATGAGGAGCCGGCACCGCCTCGTCGGGATAGCCGATCGGATAACGATGAGGCACCCCGGGAGAGAGGCAGTGACTCTGAGAATGAGGCGCCCAAGCGCAGGAGGCGGATACAGTCCGATGACGAGGCGGACAGCGACAAGGAGAACGGAGTGGAGACCAAGGCAGCGGGGGCCTTGGACAGCGAAGACGAGGCCAAGGCGGCGGACAGCGACAACGAGGAAAACCAGAGCCACAAGCGACGCAAACTGGCCGACAGCGacgaggaggaagagcaggacAAACCAGtgaagagaaagaaagccaTCCTGTCAGACAGCGAGgatgaggagaaggaggaatcCACTCCTGTGAAGAAGAGTCGTGTGGTGTCGGACGGGGAGGATTCGGACAGCGACTCATCGCCCAAACCGGCTCCCCCAAAGGCCAAGGTCCTGGGGTCAGACAGCGAGGATGAAGAGGCGGAGGAGGGCGGGAAGGCTGAAGCGGAGAAGAAGGACGAGAAGGAGCTGTTCGGCAGTGACAGCGACTCCGACAACGAGGAGGAGAAAATGATTGCGGACATTTTTGGTGAATCTGgagacgaggaggaggaagagtttacaGGTTTTAACCAGGAGGATCTGGAGGGAGATCAAGGCCAAGGAGATGCTTCCCAGAAGAAGAAGCAATCTATCGCCGACTCCGATTCGGATGACGATGTCGACAGGGGTGGCAAAGACTCCAGCTTTGTCTCCGACTTCGACGTGATGTTGGCCAAGAAGAAGGCGGCAAGCGGCAAGCGCCGGCGAAACCGTGATGGCGGGACGACTCTGAACACCCTGAAGAAACCTGCCCTGAAGAAGCTGACTCTGCTGCCCACCGTCGTCATGCACCTCAAGAAACAAGATTTGAAGGAGACTTTCATCGACAGTGGAGTGATGTCAGCCATCAAAGAGTGGATCAGCCCTCTGCCCGACAAGAGCCTGCCAGCCCTGAAGATCAGAGAAGAGCTGCTGAAGATACTGCAGGAGCTGCCCAGCGTGAGCCAGGAGACGCTCAAGCACAGTGGGATCGGCCGGGCCGTCATGTATCTGTACAAGCACCCCAAAGAGTCGCGGCCCAACAAGGACCTGGCGCTGAAACTCATCAACGAGTGGTCTCGGCCCATTTTCGGCTTGACCTCCAACTATAAGGGCATGACCCGGGAGGAGAGGCAGCAGAGAGACCTGGATCAGCAGGTGCCCCCGCGCCGCCGCCTCAGGGCATTGAGGCCAGGAGACCCCGGGTTCTGTGCCCGAGCCAGGGTGCCAATGCCCTCCAACAAGGACTACGTTGTGCGGCCCAAGTGGAACGTCGACACCGAGACTAACAGGAGCGGCTCTTCACGGAAGGGGCTGAGCCGCCTGGAGAAACACAAGAGGCGCTTGGCAGAGCAGAAGAAGCTGCGCAAGCTGCAGGGCGCCATCAAGATCAGTGTGGAGGGCAACCACATGCCCCTGTGAGGGGCAAGGGGACGAGGTGGTCCCACCAAGAAAGGGATGTCACGGGTGGACAAGCAGATGCGCCGTTTCGCCGACATCAAGCGGCTGACCAAGCCGGCCCATGCGGTGAAGATCAGTGTTGAAGGGAATAGGATGcctttgtgatttttcttttttgttcagttattttgtaaaaactctttatttttatgttccCAGTCAAAGCCACATTTTGCTCCGCCTCTTTCTGGACCAGATCCTCAGTGCTCGGTGGCAGCCTTGCAGTCGTGCAGCGCTGCCTGTGTCTCTTTGCTCCGGACGTTCCACGCTGTCCACCTTCACCGCTTTGCTGCCCTCTGGGAGCACAGGCCCAAAGTACTGCTGCGAAGTCCTGTCTGTGAAGTCAGACAGATCTTTCATCTTTCTGATCTACTGGAGACCCCTGGACAGAAAgacttgcttttattttgtttcctctgtcaatatatatatattttttttttaaccacatgATAGGTATCCATTAAACAGAGCTGGGGTTGCATTGCGAACGCAGCATTGCAACACTGTTAACTTCTGACTTCAGGACAACCAGTGACGTCACCTGCGTCGGTTCTTTTCAACCGACGAGACGTGATTTCTACAACATTCTGAGGTTTCAAACAGTCAATATCGAAATGTGTATCTCCATgcttgtattacatttttattataagttccattaaaaaaataattgcgTGAGAATAGGACtcattttgtgttgattttatgAAAGTTAGTCACTTACAGCTTCACCTTGAATGGTCAGTTAGACCTCTTGGAATCCCTCCGTTTGTTTTAGATGCATAGAAAGTACTTACAGACGACACTATATTTTAGTGCTTATATATCCTTAATGCCGAAAAGCTACATATAATGTTTACAAAACAGTCTCAGGAACCCAAtgataattgtgtttgtttaaagacATGCCGAGGTCCTCGTGCATAATTATGCTTTGATCAATACAGAATGAATTAGGAGCCTGGGCTTATAAACTTCTTCTGGAATAGTGATCTATGTTTGAAGATTTCTGCATTAATGGGACTGACACTTTGTGCATTTCCCCCCCTATAATTACATCCAACCTGCTAAATGGTTACCAGTCATTTGCCTTGTTTATCCtggttttaaacatgtttttttttaagtcaaataaATTAACTCAAGTGGAATGGAAAGGTGGAGGCATTTGCAACCCCTTTCTGTAGGTTCTTAGTCCTGCATCAAAAATATGACCTGGATGTGATCTAAGTGAGACGTACCAGTTCTTGATACGGGAGGGAGGCCTTGTACAGCATTTTAACAGCACGATAAGCGGtttctttattaatgtttatgaGCGTAAACCCTTATTCCCCACACACTGCATTGAGAGATCTGGTGTGGACCTTAAACTACAGATAGGTGGACCTCTGCAGACcatatgacattatttttcctGGTGTACCCCAGAGTAGGTATTTCCACATTTCCTGACCAGTGGGTTTCCAAAAGCCAGTGAATGGGAGGCCAATGACCACTAGCTTTACTGGCTGTGCCCTGTCTGTGGTTTCTGTTGAACAATGcacatcatttttcttttctaaaaataCCTCATTTATTGGTAGTATATTTGTAAATGGATGACGTatgcattgtataaatgttGACTATcgtatcaaataaaaatactgcaatTTCCAAAA

Function

GO: NA

KEGG:

id description
K17498 SPN1, IWS1; transcription factor SPN1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71768 lncRNA downstream 66983 39873971 ~ 39874229 (-) True G57400
TU71735 lncRNA downstream 134285 39806635 ~ 39806927 (-) True G57379
TU71703 lncRNA downstream 352301 39588686 ~ 39588911 (-) True G57354
TU71700 lncRNA downstream 353138 39580611 ~ 39588074 (-) True G57351
TU71580 lncRNA downstream 857788 39081421 ~ 39083424 (-) True G57244
TU71933 lncRNA upstream 207863 40159397 ~ 40159608 (-) True G57524
TU71955 lncRNA upstream 387813 40339347 ~ 40343479 (-) True G57545
TU72026 lncRNA upstream 769897 40721431 ~ 40777084 (-) True G57596
TU72031 lncRNA upstream 981431 40932965 ~ 40933210 (-) True G57600
TU72239 lncRNA upstream 1863067 41814601 ~ 41815807 (-) False AMCG00009571
AMCG00009500 mRNA downstream 58977 39876059 ~ 39882235 (-) True AMCG00009500
AMCG00009501 mRNA downstream 113842 39819733 ~ 39827370 (-) True AMCG00009501
AMCG00009502 mRNA downstream 172293 39767660 ~ 39768919 (-) True AMCG00009502
AMCG00009493 mRNA downstream 248663 39679918 ~ 39692549 (-) True AMCG00009493
AMCG00009492 mRNA downstream 286892 39646826 ~ 39654320 (-) True AMCG00009492
AMCG00009508 mRNA upstream 1883 39953417 ~ 39965123 (-) True AMCG00009508
AMCG00009513 mRNA upstream 35206 39986740 ~ 39996178 (-) True AMCG00009513
AMCG00009511 mRNA upstream 49529 40001063 ~ 40004644 (-) True AMCG00009511
AMCG00009523 mRNA upstream 75134 40026668 ~ 40027183 (-) True AMCG00009523
AMCG00009519 mRNA upstream 78989 40030523 ~ 40042216 (-) True AMCG00009519
TU71520 other downstream 1103648 38835316 ~ 38837564 (-) False AMCG00009472
TU71449 other downstream 1358392 38580285 ~ 38582820 (-) True G57155
TU70990 other downstream 2721136 37215960 ~ 37220076 (-) True G56800
TU70712 other downstream 4068615 35872123 ~ 35872597 (-) True G56568
TU70688 other downstream 4401402 35538887 ~ 35539810 (-) False G56546
TU71924 other upstream 197191 40148725 ~ 40157471 (-) False AMCG00009521
TU72548 other upstream 2717593 42669127 ~ 42673707 (-) True G58025
TU72928 other upstream 3530887 43482421 ~ 43945297 (-) True G58333
TU73015 other upstream 4037977 43989511 ~ 43995654 (-) True AMCG00009672
TU73231 other upstream 4556719 44508253 ~ 44512249 (-) False AMCG00009697

Expression Profile