RNA id: AMCG00009508


Basic Information

Item Value
RNA id AMCG00009508
length 3885
RNA type mRNA
GC content 0.51
exon number 21
gene id AMCG00009508
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 39953417 ~ 39965123 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGACTATAGACAATGTATCAATGAACACGTCTTTTGCTCTTGCACACAGTGACAAGGGGAAGCCCATTCTTTGCTGACACCACATGGCAGGAAACGGTACCCGGATGTTCTTTGAAGTAGTGGCACAAACAACAGGAAATAACTTCGCTTCCCAAACTTGCTCCTAACTAGGGAAAAGCCTGTTGCGGTCGGATCGGCGTCAGGAAAACATAGGGGCTGTTTTTGAGGGGGTGTAGGCGGTGTGGCGAGGCCCAAGTGCTCAATCAGTTACGATGCAACCTCTATGTAGCGGGTGGTTTTACCTTCCCCTGTGCAGCCGGGTTTCTGCAGTTTGATGTCTGGACTGGATACGCATTCGACATCTGCGGGAAAAAAGACACTGTTTCAGTATGCAAGCTAGCTGTTATGTTACAGATGCTGTTTTAAGCCGGTTTTTAGCTCGATTGTTTTATCCAAATGTGTGAGCAGCTATTGTGACAAGGTATGCGTTATTAATATCGTTAGCAAATGCACCGTATGCACATAAcggttatttaaaatattttgctaaAACTGGATTTTCAACAATCGTGCACTGTTAATCTAGCACTGAATTGTTTTACTGccctgtttaaattaaatgtttttaaaatatatgtattgttttcgAATGTAGCATCGTTAATCGTTAATTTTCTTATTATAACCCAGCAGTGTTATAGTATCAATATCCAAATATTCATGAAATAATAGGTAATGGACATGCATTTTAACAACGTGGTGATAACAGGCTCGGTGCAGTGGAGACGTCTAGCATAGTGGCATCCTTAACAGTTGTACAAGCGATATTTGGGATTGTGTTTTGACGTGCAACCTGCAAATGGATACATTACTCGACTTTGAGGAGTGCATCAGGGACTCGCCCTCGTTCAGGAGGATGCTGGGCCAGAGCGAGAGGGAGGTGGCTGAGCTGGAAAGCCGGCTGGACAAGGTGGTGAAGCTGTGTAACAAAATGGTGGAGGCTGGGCAGGCGTACAACGCGGCCAACCAGCTGTTCCTGGGAGGGGTGATGGAGTTCTCCCAGTACCACCGCAAGGACAGCACCGTCATGGTCAGGGCAGGGATGCTGCTGTACGGGAGGGATGTGGTTTTGCCAGTGTGTTACTTCTGCTTGTTCACCAGCCTTTTCTTCTCTCCCCCACAGAACTGTCTGGGCCAGTTCACTCAGGGCCTGCAGGAGATGATTCATTTCCACACGGTGCTGTTTGACCAGGCACAGAGGTCCATAACCCAGCAGTTGCAGTTCCTCATCACACAGTCTCTGCCACCGCTGCGGGAGACTCGGCGGGAGTTTGTGCGGGTCGGCGAGGATCTGGAGACGGCGGCGGTCAAGAGCGCCCAGGCCTCCCGCAACAGAGCCCCCGAGGCCGAGAGGGCCAGCCACCTTTTACTGGCAACACGCAAGTGCTTCCAACACTTCGCACTGGATTACTGTCTGCAGCTAAATAATTTTAAGGTGCAGCAGAAGGTGGATGTGTTGAATTCTATCTTTTCCTATTTTCATGCTCAGTACACCTTTTTCCATCAAGGCTTTGACCTTCTCAAAGACCTGGAACCTACTATGAAGAAAATGGCCACTAAGCTGGCCCAGCTCTCCACGGAGTGTGTGACCAAACGGAAGGAGATGGAGAACAACCATCTGCTTGTCCAACAACGGGATGCCTCTGGGGAGGCCTTGGTAGCCATCAACTCCACGAATGGGGTCACCATAGAGGGCTACCTGTTCAAGCGCTCCAGAAGAAAGAACAAGACCTGGAAGAGATGCTGGTTCTCCATAGAAAATAATCAGCTGGTTTATACAAAGTCACACAAGGAAGAAGCCTTGGTCATGGTGGAGGACTTGAGGCTGTGCACTGTGAAGTCACTGGACAACATCGACCGGCGCTTCTGCTTCGAAGTGGTGTCGGTTCAGACGAACTGTGCCCTGCAGGCGGACTCGGAGGAGCTGCGGCAGGCCTGGATCAGTGCCGTGCAGGGCAGCATTGACATGGCCTATCGCCAGCGAGCCGAGTCCAGGCAGACACAGCCCTCCTCCAGCATCCCCTCCCCCCAGACACCCCCCGAGCAGCAGGACAAGCTCCCCTCGTGGCACCCTGTCCTCAGCAGGGCTCTGCACTGCCCTGGGAACAGGCAGTGCTGCGATTGCGGGGAGAGCGATCCGTGCTGGGCCAGCGTGAACCTGGGCATCACTCTGTGCATCGAGTGCTCTGGCATTCACAGGAGCTTGGGAGTTCACCTGTCCAAAGTGAGGTCGCTGACACTGGACTCCTGGGAACCCGAGCAGCTAAAGCTCGTGTGCGCCCTGGGGAACGATGCTATCAACAGGATCTATGAATCACGGTGTGTAGAGGAGGGCCGCAGTAAGCCTGGGGGCCACAGTTCAAGGCAGGAGAAGGAGGCCTGGATCAAAGAGAAATACGTGGAGAAGAGATTTGTTACTAAGGCTGACTCTGCACCCGCAGAGGCCGGCCAATCAGATGACCCGAGCAGGTGTGGTGGAGTGGCAGTGGGGCGGATGCTGTACAGGGCTGCGCGGGAGGGAGACCTGGTGTCAATGGCTACTGCGCTGGCCCAGGGGGCAGAGGTGAACTGGGCCAATCCCGAGGAGGAGGGCAGGACGTCGCTGATCGGTGCGGCCTGTGGGGGCTCCCTGGCAGCGTGTGAATTCCTGTTACAGAATGGAGCCAACGTGAACCACAGGGACCTGCGAGGACAGGGGGCCCTTCATGCTGCTACCTTCTGGGGCCACACTGGGCAGGTATGCTTGTTCCTGAAGAGAGGAGCCAATCAGTACGCAGTGGACGAGAGAGGGCAGGACCCCCTGAGCATTGCCATGGAGGCCGCGCACGCAGACATTGTGACGCTGCTACGAATGGCTCGCATGAATGAGGAGATGAGGGACTCGGAGGGATATTTCGGTGCGATCGGTGACGACGAGACCTTCCAGGACATCTTCCGAGACTTCTCCAACATGGCGTCCCACGACCCCGAGAGGCTGTCCCGCCGGCAGttcgggagagagagagaggagggaggccCAGGGGGAGAGGGGTGAGCGTGACCCCTCTGCTCCCCTGCCGTCCCCCCATCGCTGCAGGACCCCGCAGCCTGGTCGTTCTTCAGGCTGGAAACACGTCAAACCAGGCAAACGGTCTCGTCTGTCACTGTTAGCCTGGCAGCCGCTGAGCACTTTGCTGACACGCTTCTTCTCAATTTGGGTGTTAATCCCAACAGGTAAACTTGAAAAGGTCACCATTatcaaactaattaaaaatcggctcttactgtattttctgtataaaaGCTGTGAgtccaaataaattaatacctCTGGTTTTGGATTGAAACCACTATTGTTTTTAAGTGACACTACTGATACTATTGTCATTTCTAGCCTTTCCTGAATAAATAACTactactatttattttgtatctaatTATAATATAGACGGATGCATTTCCTCTAGAGTTATTGAATTGCCCGTCTAATTTTAAggatgttgttgtgtttttaaatctgaCTTAACTGGAGCCAGAAGTtcatgaaaaaggaaaatgaaggGAGACATTCAAATAGGCCAGTATtgtaatgttaattattatgatcACTTGTCATTGCACGTACTGTACTGTAGACCATTAACTGGGAAAGCAAACGTGTGTTTAACAAAAACTCACGCTGTGTCCTATTATCTCATTAAgtggaatatataaaatgttggtCTCGGACGGAAatgaaataactttttaaaaccGTTTTTAATCACATGGTCTATCTTCCTAACACGTGTGCATTTCCAGGaatctgcttttgaaatgtaatgcataaaaAATTCCTTACCCTTA

Function

GO: NA

KEGG:

id description
K12489 ACAP; Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71768 lncRNA downstream 79188 39873971 ~ 39874229 (-) True G57400
TU71735 lncRNA downstream 146490 39806635 ~ 39806927 (-) True G57379
TU71703 lncRNA downstream 364506 39588686 ~ 39588911 (-) True G57354
TU71700 lncRNA downstream 365343 39580611 ~ 39588074 (-) True G57351
TU71580 lncRNA downstream 869993 39081421 ~ 39083424 (-) True G57244
TU71933 lncRNA upstream 194274 40159397 ~ 40159608 (-) True G57524
TU71955 lncRNA upstream 374224 40339347 ~ 40343479 (-) True G57545
TU72026 lncRNA upstream 756308 40721431 ~ 40777084 (-) True G57596
TU72031 lncRNA upstream 967842 40932965 ~ 40933210 (-) True G57600
TU72239 lncRNA upstream 1849478 41814601 ~ 41815807 (-) False AMCG00009571
AMCG00009507 mRNA downstream 1883 39941212 ~ 39951534 (-) True AMCG00009507
AMCG00009500 mRNA downstream 71182 39876059 ~ 39882235 (-) True AMCG00009500
AMCG00009501 mRNA downstream 126047 39819733 ~ 39827370 (-) True AMCG00009501
AMCG00009502 mRNA downstream 184498 39767660 ~ 39768919 (-) True AMCG00009502
AMCG00009493 mRNA downstream 260868 39679918 ~ 39692549 (-) True AMCG00009493
AMCG00009513 mRNA upstream 21617 39986740 ~ 39996178 (-) True AMCG00009513
AMCG00009511 mRNA upstream 35940 40001063 ~ 40004644 (-) True AMCG00009511
AMCG00009523 mRNA upstream 61545 40026668 ~ 40027183 (-) True AMCG00009523
AMCG00009519 mRNA upstream 65400 40030523 ~ 40042216 (-) True AMCG00009519
AMCG00009522 mRNA upstream 87028 40052151 ~ 40068249 (-) True AMCG00009522
TU71520 other downstream 1115853 38835316 ~ 38837564 (-) False AMCG00009472
TU71449 other downstream 1370597 38580285 ~ 38582820 (-) True G57155
TU70990 other downstream 2733341 37215960 ~ 37220076 (-) True G56800
TU70712 other downstream 4080820 35872123 ~ 35872597 (-) True G56568
TU70688 other downstream 4413607 35538887 ~ 35539810 (-) False G56546
TU71924 other upstream 183602 40148725 ~ 40157471 (-) False AMCG00009521
TU72548 other upstream 2704004 42669127 ~ 42673707 (-) True G58025
TU72928 other upstream 3517298 43482421 ~ 43945297 (-) True G58333
TU73015 other upstream 4024388 43989511 ~ 43995654 (-) True AMCG00009672
TU73231 other upstream 4543130 44508253 ~ 44512249 (-) False AMCG00009697

Expression Profile