RNA id: AMCG00009513


Basic Information

Item Value
RNA id AMCG00009513
length 546
RNA type mRNA
GC content 0.61
exon number 5
gene id AMCG00009513
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 39986740 ~ 39996178 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGTGTAAATACTCGACTCTCGGCACCCCAGTGCGATCTCGGCAATGGCCAACGCTAAAGCGATTCCCCCAGCCTCGGTGCTTCTCCGGCTCCCTGCTCTTCAGCAACGCAGGCACTGTAAACACTGGGCTGTCAGCTCGTGGCTTTCTCGTGTTTAATGAACACTTCAGCACGCCCGCTGCCCGGGAGCTTAGTCTGAGggaCGGGCGTGTCCTGGGAGTGCTGGAAGTGTCTCGCTCTCTGGGAGACGGGCAGTACAAGCGCTGTGGGGTGATCTCCACACCTGACCTCCGCCGCTGCCAGCTCTCACCCAGCGACAGGTTCGTGATCCTGGCCTGCGACGGCCTCTTCAAGGTCTTCTCTGCAGAGGAAGCGGTGAAGTTTGTGCTGGGGGTACTGCAGGACGACACCCTGCAGGAGAAGGAAGGGAAGACCCCGCAGGATGTGCGGTTCGAAACGGCGTGCCATCGCCTGGCCAACGAGGCGGTGCGGCGAGGCTGCGCAGACAACGTCACCGTCATACTTGTGGCCATCGAGTTCTGA

Function

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0046872 metal ion binding molecular_function
GO:0004722 protein serine/threonine phosphatase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71768 lncRNA downstream 112511 39873971 ~ 39874229 (-) True G57400
TU71735 lncRNA downstream 179813 39806635 ~ 39806927 (-) True G57379
TU71703 lncRNA downstream 397829 39588686 ~ 39588911 (-) True G57354
TU71700 lncRNA downstream 398666 39580611 ~ 39588074 (-) True G57351
TU71580 lncRNA downstream 903316 39081421 ~ 39083424 (-) True G57244
TU71933 lncRNA upstream 163219 40159397 ~ 40159608 (-) True G57524
TU71955 lncRNA upstream 343169 40339347 ~ 40343479 (-) True G57545
TU72026 lncRNA upstream 725253 40721431 ~ 40777084 (-) True G57596
TU72031 lncRNA upstream 936787 40932965 ~ 40933210 (-) True G57600
TU72239 lncRNA upstream 1818423 41814601 ~ 41815807 (-) False AMCG00009571
AMCG00009508 mRNA downstream 21617 39953417 ~ 39965123 (-) True AMCG00009508
AMCG00009507 mRNA downstream 35206 39941212 ~ 39951534 (-) True AMCG00009507
AMCG00009500 mRNA downstream 104505 39876059 ~ 39882235 (-) True AMCG00009500
AMCG00009501 mRNA downstream 159370 39819733 ~ 39827370 (-) True AMCG00009501
AMCG00009502 mRNA downstream 217821 39767660 ~ 39768919 (-) True AMCG00009502
AMCG00009511 mRNA upstream 4885 40001063 ~ 40004644 (-) True AMCG00009511
AMCG00009523 mRNA upstream 30490 40026668 ~ 40027183 (-) True AMCG00009523
AMCG00009519 mRNA upstream 34345 40030523 ~ 40042216 (-) True AMCG00009519
AMCG00009522 mRNA upstream 55973 40052151 ~ 40068249 (-) True AMCG00009522
AMCG00009517 mRNA upstream 109945 40106123 ~ 40118728 (-) True AMCG00009517
TU71520 other downstream 1149176 38835316 ~ 38837564 (-) False AMCG00009472
TU71449 other downstream 1403920 38580285 ~ 38582820 (-) True G57155
TU70990 other downstream 2766664 37215960 ~ 37220076 (-) True G56800
TU70712 other downstream 4114143 35872123 ~ 35872597 (-) True G56568
TU70688 other downstream 4446930 35538887 ~ 35539810 (-) False G56546
TU71924 other upstream 152547 40148725 ~ 40157471 (-) False AMCG00009521
TU72548 other upstream 2672949 42669127 ~ 42673707 (-) True G58025
TU72928 other upstream 3486243 43482421 ~ 43945297 (-) True G58333
TU73015 other upstream 3993333 43989511 ~ 43995654 (-) True AMCG00009672
TU73231 other upstream 4512075 44508253 ~ 44512249 (-) False AMCG00009697

Expression Profile