RNA id: AMCG00009517


Basic Information

Item Value
RNA id AMCG00009517
length 3345
RNA type mRNA
GC content 0.45
exon number 4
gene id AMCG00009517
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 40106123 ~ 40118728 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAGGGTTATAGGAGGCAGGCAGACTGTCTGGCTTGCCTGCTCCTGCGAGGGCagtttgtgtgcgtgtctgaGGGTTTTAAGGACAGCCTCCCTTTAACCTCTGCAGGCAGAGCTGTTGAGAGTCCCCTCAGGCTTCACGGAGGAAAGATGGCTTCAAGCAAACCCCAGAGATTCTTCCTGCTCACCCTGCTGGGCCTGTGGATGGCAACGGCCAGGACAGAGACGGTGGCTGAACCCTCCCCCACTCCACACAGCGAGAACCTGGAGACGACGTCAGGGGCAGGAGCTTATGACATCACCACGAGGTACCCCTTGCGTGACCACACAGATTACGTCATAGAGTACGTGGATACCACCCACTCGATGGACCAGCCGATGGACCACGAGGAAAGTGTGTTGGGCCCCGGCGCCATCGCAGCAATAGTGATCGCCGTGATCCTGGGGGCGTCTGTGCTCATAGCCCTGATCGTCATCACGCTCAAGAAGTTCACCACCGCTTAGAGACCGCAACCAGCCCCCTGCCCTGCCCACCCGACCACCCCACTCCTGACCCAGCCTGCTGGTGCACCGTCCCGCCCCCTCGCACACCCCCGCCCCGCCTCTCAACCCTCTGAAGTCTTTTTCCCCTCAGACCAACTCTCTTGCAGCGGACTACAGTAGAGCCTCGAGGATAACAGAAGCAAGCTAGCGGTTTTCAGAACCCAGCCTCCATATTTAATTTCCGATCTCCGCGGTACTCGGAGGAACAAGAAAGCCTAGATGTGGCTCGGGGGGAAGCTTGAGAAGAAAGTGCTTGGGGTAATGTGAGTTCCAAGCATTTGATATGGTCGCTTGCTTGCATATCCCATCGTTTCGTCACAGTTTTAATTCCTTGCGTTTAGATCAGCCTCCAGCGAGCTGTCTCCAGTTGTCGTTGTAGGAGATTCCATGCTTCATCCCAGCTTGTCTTTCACCTGATTGTGAATGTAGATTGCATTAAACTGGATTCTGGGAGATCATTATCTTTTACTGTCATATAAGCACAAATGGTTAGTCTGTGTACAtccgagcgagagagagcggtTTTTGGAGATGGCAGGTTTGGTTTTATAAGCTCAGGAGAAATCCTGGAAACAACAGCTCAGCAATGACTAGAATCTGTATCCAGGGTGTGTCAACAAAGAGCAAGGTTTACGAACTGAGGCTCTACTGAAATACCATATATATcattacccccccaccccaccctttATAGAGAAACCTTGTTTTACCTTTTaatgagaagagagaaaaatgcaGGCATTTCATATAAACTCCTCATAAGATAACAGGGGAactctgtgtaaatattttaacattttaaaatgagtctGGAATAcgttttttgttaattttgaagCCTAGttggaaaatataaacatacaaacagtGCCAGTTTACATGCCAGACAGAAGACAGTTGTTTTATGTAGTAATCATTAATGTAAAGGGGTTTTAAAGTGAGACTAACCAGAAGTATATTTGCTTGTCCttagttattgatttataatgtgTTGTGGTGAAgttatagatttttaaaatacaacttaCACAAGGAGCTGGCTGTGCGGGGACACTTTCTACCACTGTAGGGTAGAAGTGACTCCAACATGCCACCCTTGAATCACTGACTCCTCAAAAGTGATGTAAACTCCACTGCCATTGTGGTTTCCTTCGTTTTCCAATTGATCATAAAAACACCCTCTGAACTGACTCCCGCCCAGCTGTGTGAAAGTGCATTGTGTTCACAGGGACAATATACTTGTAGAGCACGCTGTGAAGAGACAATCTCGGGCCTGGTTACGTATTTCTTCCGAGTCAGGACAAGGGCATAGAGATCCGTGTCCTCTGAGGAAGGACATGTTACCCGTGTAGCGTTATTCAGTCTCCCAATCCTTTGGTAGGGATCGACAGTCCTTCTATTTGAACCGGGGGGACTGGATTTGATCCAATGAGCTCTGAGTATTCACTTGGAGCATACAACTGAAACCTGAGCTGTATGCTGCTACGTTGCCAAGTGCTCTCTGTgctttcccagcatgcaccacCTCACAGTGCACATACAGGTAAATAAGTAATCCAGACTTTCCTGGTATCTGCATTTTTGAATTCTCAGACACTTTCAGAGAGTCAGATTCACTCTTAATGTGCTATTGATGGCTCCACAGGGCCTGGGGTTTATGACCTCTGATCTTTGCCATCCAGTTGTTAacagaatgtgtttgtttatgcacAACCATTTGTTCATGCAGCcgttaaaatgtaataatattgacCAATTTGGCCAGCTGCTTCCTTATAGAGTGGGATTTAATGTAGggtgaaataataatttgaaaagcCTTTTCCAAGGGTTTCAATGTGAAAGTTTGACACTTTATGCAATTAGTTTTCtttccaataaatatttaacctaGCCTGTaggaattgttttaattttaattttgatggagcctgtttgttttgtggtgaccggttttaaaataaagttgtcTGTTTATGGATTGTGTAGTCGCATATGTAATGCACTGCGCAGAGCGATATACACAACGAGGAAAGTCAGCACAGAGATGTGTGGTTTGGTGAGAAGCAGAGAATGAAACCGTAAAACATGGGTTACCAGCGATCACAAGCATAATCTTCCTTTCTTCAAGGAGTTGCAGGCGGATTCAGTAAAAAGAGCCTTTATACCCAGGCTGTTTATAGATCCCCCTTAGGTGTGTGTGCGAGAGCTGATGATAAACGCTCTTGTGCCTTATACAGAAATAGGAGGATGTCAAATAAGAAAAGcttctgaaataaaattattgGCCTTGTATTTAATCCTTCTGTAGGGGCTCCTGAGTTTGAGTACTTATGGCGACACGTCAGCTTTTGTGAGGTGACAGCATCCGAAAACGCACCGTTCAGATTATATACACAGGGCCAATTTGCCAGTTATTAAGTGCATCAGAAGCGAtcctttgatttgattttatgttattaatcCCAGATGGAAGGCGAAATGCAGCTGTTTTCTGGGGTAACAAAAGAGACCATTGAAAAGATGTAACACACGAGTTACTCAAAGTCTTGTGATAAGGCGCAAATGTCACCGTCCGTCCACTTCTGTCACTGTCAGAGGTGAGCGTCTCTCTCTCGCTATACATTTCAATCTATATCTtgataaaacactgaaacacacaactACGCATCCATCTCCGCACACACTTGCataaacgcacacacaaaacctttatatgtttatataccaAAGGCAGAATGCTAAGATTAGAAGAcatggaaatgtgtgtgtgtgtgtatgtgtgtatatatatatatatatata

Function

GO:

id name namespace
GO:0015672 monovalent inorganic cation transport biological_process
GO:0030001 metal ion transport biological_process
GO:0006812 cation transport biological_process
GO:0006814 sodium ion transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71768 lncRNA downstream 231894 39873971 ~ 39874229 (-) True G57400
TU71735 lncRNA downstream 299196 39806635 ~ 39806927 (-) True G57379
TU71703 lncRNA downstream 517212 39588686 ~ 39588911 (-) True G57354
TU71700 lncRNA downstream 518049 39580611 ~ 39588074 (-) True G57351
TU71580 lncRNA downstream 1022699 39081421 ~ 39083424 (-) True G57244
TU71933 lncRNA upstream 40669 40159397 ~ 40159608 (-) True G57524
TU71955 lncRNA upstream 220619 40339347 ~ 40343479 (-) True G57545
TU72026 lncRNA upstream 602703 40721431 ~ 40777084 (-) True G57596
TU72031 lncRNA upstream 814237 40932965 ~ 40933210 (-) True G57600
TU72239 lncRNA upstream 1695873 41814601 ~ 41815807 (-) False AMCG00009571
AMCG00009522 mRNA downstream 37874 40052151 ~ 40068249 (-) True AMCG00009522
AMCG00009519 mRNA downstream 63907 40030523 ~ 40042216 (-) True AMCG00009519
AMCG00009523 mRNA downstream 78940 40026668 ~ 40027183 (-) True AMCG00009523
AMCG00009511 mRNA downstream 101479 40001063 ~ 40004644 (-) True AMCG00009511
AMCG00009513 mRNA downstream 109945 39986740 ~ 39996178 (-) True AMCG00009513
AMCG00009521 mRNA upstream 2735 40121463 ~ 40157448 (-) True AMCG00009521
AMCG00009518 mRNA upstream 41494 40160222 ~ 40167501 (-) True AMCG00009518
AMCG00009520 mRNA upstream 59758 40178486 ~ 40180235 (-) True AMCG00009520
AMCG00009528 mRNA upstream 339079 40457807 ~ 40472602 (-) True AMCG00009528
AMCG00009527 mRNA upstream 353908 40472636 ~ 40480067 (-) True AMCG00009527
TU71520 other downstream 1268559 38835316 ~ 38837564 (-) False AMCG00009472
TU71449 other downstream 1523303 38580285 ~ 38582820 (-) True G57155
TU70990 other downstream 2886047 37215960 ~ 37220076 (-) True G56800
TU70712 other downstream 4233526 35872123 ~ 35872597 (-) True G56568
TU70688 other downstream 4566313 35538887 ~ 35539810 (-) False G56546
TU71924 other upstream 29997 40148725 ~ 40157471 (-) False AMCG00009521
TU72548 other upstream 2550399 42669127 ~ 42673707 (-) True G58025
TU72928 other upstream 3363693 43482421 ~ 43945297 (-) True G58333
TU73015 other upstream 3870783 43989511 ~ 43995654 (-) True AMCG00009672
TU73231 other upstream 4389525 44508253 ~ 44512249 (-) False AMCG00009697

Expression Profile