RNA id: AMCG00009519


Basic Information

Item Value
RNA id AMCG00009519
length 4686
RNA type mRNA
GC content 0.57
exon number 18
gene id AMCG00009519
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 40030523 ~ 40042216 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACGGTGCTGATGTCAAGTGTGTGGACTGGCATCCAACCAAAGGCCTGGTTGTGTCAGGGAGCAAGGACAGTCAACAGCCAATCAAATTTTGGGATCCAAAGACGGGACAGAGCCTGGCCACGCTTCACGCCCACAAAAACACAGTGATGGAAGTGAAGTGGAACCTGAATGGCAATTGGCTGCTCACGGCGTCACGTGACCACCTGTGCAAGCTGTTTGACGTGCGGAACCTGAAAGAGGAACTTCAGGTCTTCAGGGGTCACAAGAAAGAGGCCACAGCTGTTGCCTGGCACCCCATCCATGAAGGCCTGTTTGCCAGCGGGGGCTCTGATGGATCTCTGCTCTTCTGGCATGTTGGAGTGGAAAAGGAGGTGGGAGGCATGGAGATGGCCCACGAGGGCATGATCTGGAGCCTCGCCTGGCATCCATTGGGCCACATCCTCTGTTCTGGCTCCAACGACCACACAAGTAAATTCTGGACCAGGAACCGCCCTGGAGACAAGATGAGGGATCGTTACAATCTGAACCTTCTACCTGGCATGTCAGAAGACGGTGTGGAATACGATGATATTGAGCCCAACAGCATGGCAAACATCCCAGGAATGGGTATCCCTGAGCAGCTGAAGATGGCGATGGAGCAGGAGCAGAGTGGGAAAGAGGATGTCGGTGAGGCGGAGATGACAATCCCAGGCTTGGACTGGGGTATGGAAGAAGTGATGCAGAAAGACCTAAAGAAGGTCCCACAGAAGAAAGTTCCCTACGCCAAACCCATCCCAGCACAGTTCCAGCAGGCCTGGGCAGAGAACAAGGTGCCTGCTCTTGCCCCTGGGGAGCTCCCGAAGGAGAGGAAGGATGAGAAGAAGGTCGATGGCAAGAAGAAGACTCAGGCGGAGATTGAGCGGGAGATGGCAGCCCTGCAGTACACCAATCCGCTGCTGCTGGAGCAACTCAAGATTGAACGTCTTGCTCAGAAACAGTCAGACCAGGGTGCTCCTCCTCCAGGCCCCCAGCAGGGGGCGATGCAGCCTTTCCCTGGACAGGGGCCCATGCCCCCACCTCCTCAGGGATTCCAGCAATCTATTCCACAGCAGATGCCCCCCAACATGCCTCCTATGGGTCCAGGAGGCCCACAAGGACCATTTATTCCCCAGGGCCAGATGGGCCCCCCTGGACCTCAGCTGCACCAGGGGCCTCCTGGACCTCAGGGCTTCATGGGGCCTCAGGATATGCATGGGCCACAGGGCATGCCGAGGCACCCAGGCCCTCATGGACCAATGGGGCCTCAGGGGCCTCCTGGTATGCAGGGCAACAAGGGCATGCATGGACCTCCAGGAATGCCTCCAGGATCCAGAGTTATGCAGGGCCCACCCCCAGGGGGAATGCAGGGTCCTCCAGGGCCACCAGGGGGCATGATGGGGCCCCCACCTCGTGGAATGGGGCCTAGAGACAATCAGGGACCTCCTCAGGGAGGCATGATGGGTCCCCAAGACATGAGGGGGCCCATGCCCCAGGGAAACATGATGGGACACCAAGGGCCACCCATGCAAGGGGGGATGATGGGACCCCCAATGCATGGCCCCCAGAGCCAGCAAAACCAGCCTAGAGGTCATGGAAATATGCAGGGAATTGGGAACATGCATGGAATAGGAAACATGCCAGGTCCTCCGGGGGGTATGCATGGACATCCTGGAAATATGCAGGGACATCCTGGAAATATGCATGGACCTGGCAATATGCAGGGTCCTCCGGGCAACATGCAGGGACCTGGAAACATGCATGGACCTCCAGACGGGACAGAACCAAGGGCCACCTCCACTGATGTCCGGGATGGTGACGGGCTGCTGGGTCCTTGCCCTGGCCCGGTGGTTAGGGTGCCCAGCCCCGGCCATGGTGGTATGATGCTCCAGCCACACCAAGGAATGGGCGATTGCTGGCATCCAGGGCCCGGTAACATGCCTGGCACTGCAGGACAGCCAGGGGACGCCCGTGGGCCGCCCAACCATCACATGGGTCCGCCACCTGACCGGCGAGGACCTGAGGCGGCTGTGGTACCGGAGCAAGGCTCTGAACGAGGCGGGCCTTTCTGGGGGGAGTCACGTGACGGACGCCGCGGCCCCACTGCGGAATTCGAGGGCCCAGATGACCGGTTCCGACCCCGGGGGGAGGAGAGCTGGaggcaacagcagcagcaccccacccccccgccgcGAAGCCAGAGCCAGGAGTTCCGCGAGGGGGACTCCCGCGGCCACAGCAGAGGAGGGCCCCACGGAAACTGGGAGGGCCGGCGGACCTCGGAGGAGAGGTTCCCTCGGGATGGGGAGGAGCCGCGGTTCAGGGGGCGCAGGGAAGAGAGGTTTGACAGTTACGAAGGCCCCGGGGAAGAGTTTGAACAGAGGCCGCGAGACCAGAGACGCCCCCCCCATGGCCGGCATGGACAAGATTTTGACCATGAGCAGTCGGACGAATCATTCCGGAGGGGCGGCCCTGCGCGGCACGACGCCCGGGGCGGACGCAGCTTCTCCGAGGAGTTCTCCGGAGAGGAGGGTTACGAGCCGCAGGATGACAAAGCGAGAAGCTGGGATgctggagggagggggaggagtcGTGGGACACCCAGAGGAGGCGGACGGAAGGGGCTGCTCCCAACTCCCGATGAGTACCCCCCACATTACGAAGGCGGACGCAAGCCAGACAACTGGGAGGCCGGGCGAGACCCAggTCATGAACACTTCAGGGATGGACCACGGCCCGACCACACACCCCGCGACAGCCCCTCCCCGGCCAGCAGGGAACGCTCCTCCTCCCTCCAGGGGATGGACATGGCATCGCTACCCCCCCGCAAGAGGCCCTGGCATGACGGGCCGGGCACAGGCGACAGAGACTCCCCCGGGGGCGGCCCTGATGACCGAGCCCCTGGCCGTGGCTCTTCTCAGCGCGGGATGAAGCTGGGCAGGTCCGGCTCTCAGGACGGAGACTCGCACAGAGAAGAGGCCGGCTTCGGGGGCACGTCCCGAGGAGCAAGGGGGACCTGGGGTCGAGGTTCaggcggaggaggaggcagTGGAGACGGCGGACGTGGCGGAACAGGAGGGGCAGCCGTGAACATGAACAGCTCCGGGCCGGCGCGGCGCGGCTCCACTCGCGGGTCTTCACGGGGAAGCCGGGGCCGATAGGGCTGACAGAACTACGGTGGGGGTAGAGGGACAATGTTTCACTCTTGACATGCTGTGAAGACTTGAGCGGGACAATCCTAAGGCCTCGGGGACAGGTTCAAAGCAGGGGGGATGGGGTGGGATTGTGGGGAAGAGCAGCAGCACCTTCCAGAGGTGGGACGCTAGCAGAGAAGGgcagcagcacagcactgctCCTCACAGGACTCGCGCTCTTTACTGGGATCAACGGGGCCACATCCTGCTGGATTAATTGACTCGAAACAGAAactccctgtgtgtgtgaatctgtgtgtttattgctCCTCTGTCCACTCATTAACCCCCAAGCTCCTGTCCAAGGCAGTTTACCCTATATGTCACAGGAACAGGTCCAATTAGTGGTTAGGTATGTCTTCACACACAGCCTGTCCACTGTCTGTCCTGTTGGCACCGAACTGTCATGCAATCGGTGTTCTCCCATTCTAATTCTTTGTACGGCATTTCATCTCCCACCTTTTCCACTTGTTCTAACTCTTCCCTCACTAATCCATTCATCACACACTTCCAGGATGAGCGCCGGTACCGATGTCTCTGGCATCGATGACAAAGGAGACCTCCACACGTAGAGATCTCGAATGAGTTGATGGAAACGAGCTCAGATGGTTGATTTTTTGGTTATGTTTCACAGTCTCGGTTGTACGATTTTCACACAGGTTGATTCAGTGCTCTCCCTTCCTGTCTCACTGTCACAGACCTCAGGCCAACACCCATTGACAGTATTCTTGGACTGTCCTTCCTGACAGCCACCCCAATTATAAAACCCAAGGACAGAGTATTGATCGACAGGATGAGTTTGTCAGCTCACCGTGGATGAGGTGGCAGTTACAGCTGCAGCTGTTTTCCATGTTGTATTTCCATCTCTTATTCCCCTGAGACACCCAGATGCCCCCTGGCACCCTTGAACAAACCGATCGGACATTTTCTGTCACTcacctttcttctttttatagAAGTGCCATTGGATTAAAAGatgtaaataaattgaataaatgcagaaagaaaTCAACAGCTGGATGCTCTAATTCTAGTTCTTGCCGCTGGTGTTCGCTGTGTTCTGAAATGGGGGGACGCGTCCATCCTGCACGAGGAAAGTGGCGCGAGAGCCACTGCGGCTCTGTTCTCACTGAGGAAATTCAGTAATTGATGTTTCCGATTCTACACATGTTTTTTCCGGGAGAGCACATTTTGCtacaaagaaaagaacagcGGGTTctcgtttgtttttctttacggAACTCCTAGTTTTCTTTGgttcctttttaaaacaagcaaaaaaaaaaaaaacaccacaaaaaaaaataaaagtatactgGACTCTGTAACATTGCCAGGCAACTTTCTGGGTGTGCAGAGACAGTGTGTTTCTTTGTAATTGTACAGTTTGTCAAGAGATTGTcatatcgttttttttttgttcattttttttgtatgaaactGCAATAGAATTTGTGCAaaatttaccaaaaaaaa

Function

GO: NA

KEGG:

id description
K15542 PFS2; polyadenylation factor subunit 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71768 lncRNA downstream 156294 39873971 ~ 39874229 (-) True G57400
TU71735 lncRNA downstream 223596 39806635 ~ 39806927 (-) True G57379
TU71703 lncRNA downstream 441612 39588686 ~ 39588911 (-) True G57354
TU71700 lncRNA downstream 442449 39580611 ~ 39588074 (-) True G57351
TU71580 lncRNA downstream 947099 39081421 ~ 39083424 (-) True G57244
TU71933 lncRNA upstream 117181 40159397 ~ 40159608 (-) True G57524
TU71955 lncRNA upstream 297131 40339347 ~ 40343479 (-) True G57545
TU72026 lncRNA upstream 679215 40721431 ~ 40777084 (-) True G57596
TU72031 lncRNA upstream 890749 40932965 ~ 40933210 (-) True G57600
TU72239 lncRNA upstream 1772385 41814601 ~ 41815807 (-) False AMCG00009571
AMCG00009523 mRNA downstream 3340 40026668 ~ 40027183 (-) True AMCG00009523
AMCG00009511 mRNA downstream 25879 40001063 ~ 40004644 (-) True AMCG00009511
AMCG00009513 mRNA downstream 34345 39986740 ~ 39996178 (-) True AMCG00009513
AMCG00009508 mRNA downstream 65400 39953417 ~ 39965123 (-) True AMCG00009508
AMCG00009507 mRNA downstream 78989 39941212 ~ 39951534 (-) True AMCG00009507
AMCG00009522 mRNA upstream 9935 40052151 ~ 40068249 (-) True AMCG00009522
AMCG00009517 mRNA upstream 63907 40106123 ~ 40118728 (-) True AMCG00009517
AMCG00009521 mRNA upstream 79247 40121463 ~ 40157448 (-) True AMCG00009521
AMCG00009518 mRNA upstream 118006 40160222 ~ 40167501 (-) True AMCG00009518
AMCG00009520 mRNA upstream 136270 40178486 ~ 40180235 (-) True AMCG00009520
TU71520 other downstream 1192959 38835316 ~ 38837564 (-) False AMCG00009472
TU71449 other downstream 1447703 38580285 ~ 38582820 (-) True G57155
TU70990 other downstream 2810447 37215960 ~ 37220076 (-) True G56800
TU70712 other downstream 4157926 35872123 ~ 35872597 (-) True G56568
TU70688 other downstream 4490713 35538887 ~ 35539810 (-) False G56546
TU71924 other upstream 106509 40148725 ~ 40157471 (-) False AMCG00009521
TU72548 other upstream 2626911 42669127 ~ 42673707 (-) True G58025
TU72928 other upstream 3440205 43482421 ~ 43945297 (-) True G58333
TU73015 other upstream 3947295 43989511 ~ 43995654 (-) True AMCG00009672
TU73231 other upstream 4466037 44508253 ~ 44512249 (-) False AMCG00009697

Expression Profile