RNA id: AMCG00009520


Basic Information

Item Value
RNA id AMCG00009520
length 876
RNA type mRNA
GC content 0.57
exon number 3
gene id AMCG00009520
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 40178486 ~ 40180235 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCTGGACTGAACGTCTCCCTGGGCTACTTCTTGGTAGTCGTCGTCCTCAGCGAGGTTGCAGCGTTCCTGCTAAGGCTTGGCCCGGTCTGGGGCTTTTCCGCCGAGCTCCCTGTATCTTTCATGTTAGTAGCCTGCTGGTCGGAGTTGGGAACCTTAAAAGATGTGGGGTTGTGGGCAGGAGGCTTTGGCCCCGATGTCACTTTGACTCTGCTGTTCTTGGTGTTGATGACCCACAGTATCATCTCCCGAGGGGCCTCCGGGAACCCAGCCATGACCCTGCGGAGTTTCCTGCTGTCAGACACTTCAGCTCTGAGCACTCTCTCTTGTCTCGCTGGTCAGTTCACCGGAGCCTACTTGGGTCGATTCTTCGCCACCTACTACTGGTCCTTGGAGCTGACTGACATGCACATGATCCAGAACATGATGTCGTCCGAGTGCAGCCCATCTCTGCGCGTCTCTTTGTCGCAGGGTGCGTTCACAGAGGGGATATGCACCCTGACTTTCCACCTACTTGCCATGCGGCTTAGTGGCAGTCCTGTGCTGTGCAGAGTGCCACTCACCGCGCTCGCCATCACAGCACTCTCGTACGCAGCCGGCGGCTACACCTCTGGTTACTTCAACCCCGCCCTGGCTTACGCCCTGACGTTCAACTGTCCGGGGTTTACTCTGATAGAGTATGCTGCGGTGTACTGGCTTGGCCCACTGGCTGGAATGACTTTGGCACTGTTTCTATACACTGGTCACATTCCTCGACTTTTTGCACGGAACCTCCTCTACTCCCAGAAAAGCCGCTACAGAGTCCCTGTGGGGAAGAGCTCTCCGGACCAGATGGGGAGGACTGGTACTAAGCAGGGGGGCAAAAAGGGCGACTGA

Function

GO: NA

KEGG:

id description
K09871 AQP12; aquaporin-12

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71933 lncRNA downstream 18878 40159397 ~ 40159608 (-) True G57524
TU71768 lncRNA downstream 304257 39873971 ~ 39874229 (-) True G57400
TU71735 lncRNA downstream 371559 39806635 ~ 39806927 (-) True G57379
TU71703 lncRNA downstream 589575 39588686 ~ 39588911 (-) True G57354
TU71700 lncRNA downstream 590412 39580611 ~ 39588074 (-) True G57351
TU71955 lncRNA upstream 159112 40339347 ~ 40343479 (-) True G57545
TU72026 lncRNA upstream 541196 40721431 ~ 40777084 (-) True G57596
TU72031 lncRNA upstream 752730 40932965 ~ 40933210 (-) True G57600
TU72239 lncRNA upstream 1634366 41814601 ~ 41815807 (-) False AMCG00009571
TU72308 lncRNA upstream 1860964 42041199 ~ 42056128 (-) False AMCG00009582
AMCG00009518 mRNA downstream 10985 40160222 ~ 40167501 (-) True AMCG00009518
AMCG00009521 mRNA downstream 21038 40121463 ~ 40157448 (-) True AMCG00009521
AMCG00009517 mRNA downstream 59758 40106123 ~ 40118728 (-) True AMCG00009517
AMCG00009522 mRNA downstream 110237 40052151 ~ 40068249 (-) True AMCG00009522
AMCG00009519 mRNA downstream 136270 40030523 ~ 40042216 (-) True AMCG00009519
AMCG00009528 mRNA upstream 277572 40457807 ~ 40472602 (-) True AMCG00009528
AMCG00009527 mRNA upstream 292401 40472636 ~ 40480067 (-) True AMCG00009527
AMCG00009531 mRNA upstream 301441 40481676 ~ 40493252 (-) True AMCG00009531
AMCG00009532 mRNA upstream 314964 40495199 ~ 40495887 (-) True AMCG00009532
AMCG00009537 mRNA upstream 579660 40759895 ~ 40833267 (-) True AMCG00009537
TU71924 other downstream 21015 40148725 ~ 40157471 (-) False AMCG00009521
TU71520 other downstream 1340922 38835316 ~ 38837564 (-) False AMCG00009472
TU71449 other downstream 1595666 38580285 ~ 38582820 (-) True G57155
TU70990 other downstream 2958410 37215960 ~ 37220076 (-) True G56800
TU70712 other downstream 4305889 35872123 ~ 35872597 (-) True G56568
TU72548 other upstream 2488892 42669127 ~ 42673707 (-) True G58025
TU72928 other upstream 3302186 43482421 ~ 43945297 (-) True G58333
TU73015 other upstream 3809276 43989511 ~ 43995654 (-) True AMCG00009672
TU73231 other upstream 4328018 44508253 ~ 44512249 (-) False AMCG00009697
TU73235 other upstream 4361659 44541894 ~ 44542809 (-) True G58584

Expression Profile