RNA id: TU71924



Basic Information


Item Value
RNA id TU71924
length 474
RNA type TUCP
GC content 0.49
exon number 5
gene id AMCG00009521
representative False

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 40121463 ~ 40157471 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CCTGGActcagccatcttgttgtggaAACGAAGAGACCGAGAGCTCGTATAGATACCCTGCACTGTCAGTATAGCAGAGAATTGCAAGAGAATAATATAATGGCAGAAACCCAGACACTTAACTTTGGACCAGAATGGCTCCGTGCTCTGTCCGGTGGAGGCAGTATcacctctcctcctctctcaccagCATTGCCAAAGTATAAACTCGCAGACTACCGCTACGGCAGAGAAGAAATGTTAGCACTTTATGTAAAGGACAATAAGATTCCCCTAGACCTACAAGACAAGGAGTTTCTGCCTATTTTACAAGACGAGCCCCTGCCACCACTGGCACTTGTACCATTTACAGAGGAAGAACAGAGAAATTTCTCCATGTCTGTAAACAGTGCAGCTGTCCTGCGATTAACAGGAAGAGGCGGAGGAACGGTGGTAGGGGCGCCAAGAGGTCGAAGTTCCTCAAGGGGTCGAGGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU71768 lncRNA downstream 274496 39873971 ~ 39874229 (-) True G57400
TU71735 lncRNA downstream 341798 39806635 ~ 39806927 (-) True G57379
TU71703 lncRNA downstream 559814 39588686 ~ 39588911 (-) True G57354
TU71700 lncRNA downstream 560651 39580611 ~ 39588074 (-) True G57351
TU71580 lncRNA downstream 1065301 39081421 ~ 39083424 (-) True G57244
TU71933 lncRNA upstream 1926 40159397 ~ 40159608 (-) True G57524
TU71955 lncRNA upstream 181876 40339347 ~ 40343479 (-) True G57545
TU72026 lncRNA upstream 563960 40721431 ~ 40777084 (-) True G57596
TU72031 lncRNA upstream 775494 40932965 ~ 40933210 (-) True G57600
TU72239 lncRNA upstream 1657130 41814601 ~ 41815807 (-) False AMCG00009571
AMCG00009517 mRNA downstream 29997 40106123 ~ 40118728 (-) True AMCG00009517
AMCG00009522 mRNA downstream 80476 40052151 ~ 40068249 (-) True AMCG00009522
AMCG00009519 mRNA downstream 106509 40030523 ~ 40042216 (-) True AMCG00009519
AMCG00009523 mRNA downstream 121542 40026668 ~ 40027183 (-) True AMCG00009523
AMCG00009511 mRNA downstream 144081 40001063 ~ 40004644 (-) True AMCG00009511
AMCG00009518 mRNA upstream 2751 40160222 ~ 40167501 (-) True AMCG00009518
AMCG00009520 mRNA upstream 21015 40178486 ~ 40180235 (-) True AMCG00009520
AMCG00009528 mRNA upstream 300336 40457807 ~ 40472602 (-) True AMCG00009528
AMCG00009527 mRNA upstream 315165 40472636 ~ 40480067 (-) True AMCG00009527
AMCG00009531 mRNA upstream 324205 40481676 ~ 40493252 (-) True AMCG00009531
TU71520 other downstream 1311161 38835316 ~ 38837564 (-) False AMCG00009472
TU71449 other downstream 1565905 38580285 ~ 38582820 (-) True G57155
TU70990 other downstream 2928649 37215960 ~ 37220076 (-) True G56800
TU70712 other downstream 4276128 35872123 ~ 35872597 (-) True G56568
TU70686 other downstream 4608915 35538887 ~ 35539810 (-) True G56546
TU72548 other upstream 2511656 42669127 ~ 42673707 (-) True G58025
TU72928 other upstream 3324950 43482421 ~ 43945297 (-) True G58333
TU73015 other upstream 3832040 43989511 ~ 43995654 (-) True AMCG00009672
TU73231 other upstream 4350782 44508253 ~ 44512249 (-) False AMCG00009697
TU73235 other upstream 4384423 44541894 ~ 44542809 (-) True G58584

Expression Profile