RNA id: AMCG00009522


Basic Information

Item Value
RNA id AMCG00009522
length 3300
RNA type mRNA
GC content 0.43
exon number 7
gene id AMCG00009522
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 40052151 ~ 40068249 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACGAGATGGAGGCCTTTCGGTAATtaagagaaggggaaaaaaacgcGGAGAGAAAGAGGCCGAGAAACTTCTACAATACCGCGTCCAAAAGGGCCACTTCACCGAGAGGGGAGCTCGGTTAGCAGGGGGAAGGGTGTGGGAATCCGCCCGTGGACACGACTGGATATATAGTGGGTGTGCTGACCTGGACCCGCCATGGCGACTGAAATTGGCTCCCCGCCCCGGTTCTTCCACATGCCGCGGTTCCAACACCAGGCGCCGCGGCAGCTGTTCTACAAGCGGCCCGACTTCGCCCAGCAGCAGGCCATGCAGCAGCTGACCTTCGACGGCAAGCGCATGAGGAAGGCCGTGAACCGCAAGACCATCGACTACAACCCCTCGGTCATCCGCCACCTTGAGAACCGTCTCTGGCAACGAGATCACAGGGATTTCAGGACCATTCAGCCTGATGCGGGATTTTACAATGAGCTCGTTCCTCCCATGGGCATGCTGAATAACCCAATGAATGCAGTTACCACTAAGTTTGTCAGGACTTCCACCAACAAAGTGAAATGTCCTGTGTTTGTAGTACGGTGGACCCCAGAAGGCAGGCGTCTGGTCACTGGGGCCTCCAGTGGGGAGTTCACACTGTGGAATGGGCTCACCTTTAACTTTGAAACCATTCTCCAGGCCCACGACAGCCCGGTGCGAGCCATGACCTGGTCTCACAACGACATGTGGATGCTGACGGCGGACCACGGCGGCTACGTGAAGTACTGGCAGTCCAATATGAACAACGTCAAGATGTTCCAGGCGCACAAGGAGGCGATTAGAGAGGCCAGTTTCTCACCCACGGATAATAAATTTGCCACTTGCTCTGATGATGGAACTGTTCGCATCTGGGACTTTCTACGGTGCCACGAGGAGAGAATCCTGCGAGGTATGTTAAAGTTTGCGGCACCAAAGAACATGCTTTCTCAACATgtcattatacacacacacacacacacacacacacagacacacagaccggCATCTGCGCGGTGGCTCGGTACGGCTCAGTTGGTGGGATGTGCACTTATGCCTCGGCTGCACCTTTTCaggatttaaagaaaaacttCTCCTGTAGGTTCGTTTGCAGTTTCATTTCCGCAGCAGAAGAGTATGTCCTCCTCATGTGGCTTCTTGGCTCAAACTCTCCGTTAAGTTTTGAATTTTGCTTTTTAAGTGCACCACACTCGTATGCGAGAAATCCTACAGGTGATGAAAGGAACGTGTTTCAAGATTGGTGTATTTTTGACGGATAGGAACTTAGTATTCAGTGTAATTTCCCCAGAAGTGGCCCAACCTGTTTTGTGGTTTATCTGTGTtttacaactgttttttttttaacaaatgtatttgaatggtcTTAGTATGCTTTAGGTTTTCTGGtgtgatttataaaataaaatatttggctTCATTAGAGCTTGGATCTTTAGGGAGATGAAATTAAAACTTATGCATCTATGAGTAAAATGGATGCTTTGATCAAATCTGTACGTTACACATTTAGGTGGTTTGTTTACTGATCTTACAATCTCTTTTTGATATGAATATATTACACAAGTCTGTACTGGTGTCAATTGTACTGCAAACCTGTTATGAGCTCTATACAAACCTTTCGCTTATGTCAACACATCTGTATTTAAAGGAACATGTTTCGGTGATGTGTGTTGTATACGCCCATTAAAGTGTTTTGCCTCATCAGATTCCATGGCAAGATACCATGTCTTCATTGTGTGCCCATAGCTACCCATCACAGGATTGGTACAAACCCCTGATCCACTAGTGTTCTTCGTGGGAGTATTTAATGATCTTGAAGAACGGATTGTTCCTTTATAAACCCATTTCTACAGTTTTTCTAGATTTTTACATTACCACCTTCcggttttattttactgttcaattatttataatgtgtcGTCTTGGGGCTGAATTATTCAGTTGTTTCTTCACCTGTCCACAACTTATCCCGTGTGGCCTTGTGATTAAATCAACAAGGTACAATGTCCATTTTAGTCATTTTGCTTGAATGTTTTTGAGCAGCCATCTGGGATTTAGGATTAGTCTAGGGTGTTTGAGtcttttggttttcctttttgcCTTGGCCACCGATTTGTAAAGCCTTCTGTGTCCGTTGATTGTCTGCTTTGTTGTGAAGGATAActacataattatatttgttcatCTTCCTCATAGCTATGGTTACTCACCATGGAGAGTACAGCCAAGTATCAGGTTAAATTAATCTgtgtaagaaatatattttattcccttTTGAATAGGATAATAACCTTTAGTGTCAAGCCAATGGTTTATGTACAGTTTTCTCTAAGAAGGATGGCAGCTTAATTTTGTACCAtgagtgtattttaaattgtgtgtgtatatacacatactaaCACACTGCATAAGCAATATTAGTAGAGTAACTACTTACAGGACACAGTGCATTCTGTCAAAGTGTCTTGCATATGTTGTACAGACTGTTTTACACAGGAAAAAACCCTATGGGAATGATTGTGTGCTAGGCAGCTCTTTTAACAGCACAGATTGCGAACTATAGCCTAAGGGCTTCTCTCCCTGCAATGGAATAATAGCCCTGTAGCATCAGATGTccttattatattgttttaaaggaacAATTTAATCCCTTGAAGGTTCAggacaaaaataatgtttaatggaGTGTTTACCTTTTAAGTAATTTACTTAATATAAGGAGCATTTTCACCATGGGGGGGTGGATGCAACATTCCCCAACTCCACCCCCTCCTCACCGATGCACCCCCACCACCATCAGACTGCAATCACAATTAATGCCGTTAATACTtgcaaaatggcaaaaacattaaattgtctCTATGTGTGACATTGCAGAACATCTCATTAACTGGAGATGTTATTGTTTCACATGGATCTTGGctttgaatgtgaaattaaaactgGCTCTGCAATGATCTGACAATAGATTTATTGTATTGTGGCACAGCCCTCTGCTGCGTAGAAAATCATGCTTTTGATTaacatgtttttggtttgtgcTCCAgtcttggggggaaaaaaaatcttccgAACATCAGGAATTTAAAATCTCTTTCACACGCAATTAAATTTATATTGGccaggataaaaaataaaataaaaacaaatgatcctCACTGATACAATTTCAAAGCAATTttgacacaatttaaaagtaatctgCAAGAATTAGCTGAGTCAGAGTACAATTTGGTTTTACATATCATTAAGAGGCTGCTaattgtgtgttgg

Function

GO: NA

KEGG:

id description
K15542 PFS2; polyadenylation factor subunit 2

JBrowse2

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Neighbor

RNA id RNA type direction distance location representative gene id
TU71768 lncRNA downstream 177922 39873971 ~ 39874229 (-) True G57400
TU71735 lncRNA downstream 245224 39806635 ~ 39806927 (-) True G57379
TU71703 lncRNA downstream 463240 39588686 ~ 39588911 (-) True G57354
TU71700 lncRNA downstream 464077 39580611 ~ 39588074 (-) True G57351
TU71580 lncRNA downstream 968727 39081421 ~ 39083424 (-) True G57244
TU71933 lncRNA upstream 91148 40159397 ~ 40159608 (-) True G57524
TU71955 lncRNA upstream 271098 40339347 ~ 40343479 (-) True G57545
TU72026 lncRNA upstream 653182 40721431 ~ 40777084 (-) True G57596
TU72031 lncRNA upstream 864716 40932965 ~ 40933210 (-) True G57600
TU72239 lncRNA upstream 1746352 41814601 ~ 41815807 (-) False AMCG00009571
AMCG00009519 mRNA downstream 9935 40030523 ~ 40042216 (-) True AMCG00009519
AMCG00009523 mRNA downstream 24968 40026668 ~ 40027183 (-) True AMCG00009523
AMCG00009511 mRNA downstream 47507 40001063 ~ 40004644 (-) True AMCG00009511
AMCG00009513 mRNA downstream 55973 39986740 ~ 39996178 (-) True AMCG00009513
AMCG00009508 mRNA downstream 87028 39953417 ~ 39965123 (-) True AMCG00009508
AMCG00009517 mRNA upstream 37874 40106123 ~ 40118728 (-) True AMCG00009517
AMCG00009521 mRNA upstream 53214 40121463 ~ 40157448 (-) True AMCG00009521
AMCG00009518 mRNA upstream 91973 40160222 ~ 40167501 (-) True AMCG00009518
AMCG00009520 mRNA upstream 110237 40178486 ~ 40180235 (-) True AMCG00009520
AMCG00009528 mRNA upstream 389558 40457807 ~ 40472602 (-) True AMCG00009528
TU71520 other downstream 1214587 38835316 ~ 38837564 (-) False AMCG00009472
TU71449 other downstream 1469331 38580285 ~ 38582820 (-) True G57155
TU70990 other downstream 2832075 37215960 ~ 37220076 (-) True G56800
TU70712 other downstream 4179554 35872123 ~ 35872597 (-) True G56568
TU70688 other downstream 4512341 35538887 ~ 35539810 (-) False G56546
TU71924 other upstream 80476 40148725 ~ 40157471 (-) False AMCG00009521
TU72548 other upstream 2600878 42669127 ~ 42673707 (-) True G58025
TU72928 other upstream 3414172 43482421 ~ 43945297 (-) True G58333
TU73015 other upstream 3921262 43989511 ~ 43995654 (-) True AMCG00009672
TU73231 other upstream 4440004 44508253 ~ 44512249 (-) False AMCG00009697

Expression Profile

AMCG00009522 Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 30.
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AMCG00009522 Expression in each Bioproject

Bar chart with 7 bars.
AMCG00009522 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 60.
End of interactive chart.

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00031808 False 4202 mRNA 0.53 22 NC_007113.7 5410870 ~ 5443681 (-)
grasscarp (Ctenopharyngodon idella) CI01000003_00390997_00406970.mRNA False 4937 mRNA 0.50 23 CI01000003 390897 ~ 408312 (+)