RNA id: AMCG00009531


Basic Information

Item Value
RNA id AMCG00009531
length 1828
RNA type mRNA
GC content 0.58
exon number 17
gene id AMCG00009531
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 40481676 ~ 40493252 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGAGCCGGGCCGGAGCTCAGGACGCACAGCGCATCCCAGGACCGAGAGCAGCCCGGAGAGCTGGATTTGATGTTGGTAGTGTACGAAGCAGATGAGGGAGACGACACGACCACCGGTCACGGAAAGCCAGATGGGCAGCAGGAAGTGGCCGGATGGCCAGTGCCTATCTCAGCTTGCCTGGTGGGCTCCATAGGGAAAGTCAATGAGAAGATTGCTCATCTCCAACTACTGCCATGCAGACAGCAGCTGATCAACCACAGTGGATATGATGGCCCAAACTGGTCTGAGCCAGACACAAGTGAGAAGATTGGACAGCAGTCCCTTGGGAATACAGagagagatgagaaAGACGTGCAGATGTTCTCATGTGTCTACCAAGAGCAATCCTCACATGCCCTGCAACTGGACATGCAACACAAAAGCAGCCAGAGACTTGAAAAGAGGGATCAGGACAAACCCAAACTTGTGGAAGTGCACCAGTACCCTGGCTTTAGCAAGGAAATGCCAACACCTCTGCCGAACAACATCGCCCTCAACACCATCATGTCCCGGGTGGTTAAAGCTCAGGGGCACCTGGCCAAAAAGCCCAGATACCAGGCGGTGTTTCAGAGTCTGCTGGCCTCACCGGTGATGCAGGACTTACTGCTGGACTCCTTCTGGTGGATATTACTTCAAAACtaccagCCGGATAGCAGCTCTCAGGCTCAGCTGTTCGCGCGGCTCTCTGAGAGTTACGTCCGATTCCTGACCCAGAGTTTGTTCTCGCGCTACGGAGACGTCTTCCTGAAGGAGTTCCCCCAGACTCTGAGCCAGGCGCTGTACTGCTGCTTCTGTTCCTGCTTCCCTCAGTCTGTCACCTCCTTCCACTGCAACGCGTTCCTCTGCCAGCTGTGCCACACGGCCTACCAGTGGGTCGGAGGTATCCGCCCCGCTCCTGACATCTTCGGTCAGTGGGATTTCACGGCTCTCGAGCCTGAAGAAGTGCGGCGAGGGGAGCCGACGTCCGGGTCCGACAAACACAACGCAGGGAGTGGAGTGAGTTGGTCTTTCCTGGACGCCGTCTCCTCCAGCCCCCTCATCTCTCCCCTCCGTTCTCGCAGTCGCCAGCCCAGCTTCACGACGACGCGCGTCGAGAGCAGGAGCTCAGTGTTGTGTCCCAGCTGCCCCAGTCTGGCGAGCATGCGGCCCAAAGGCATGCTGGGAACAAGCAGTTGTGTTTCCATGACAGCAGAACACAGTGAGGTCCAGGTCAAAAAGGCTGAGGTCGAACTGAAGGTCTTCTCCTCCCCGAGCGAGGGAGCGTCTCACTGGCCTGGGACACAGTCCCCCACAGCCTGTCCCGGGCCCCAGTTCCAGAAGTGTGTCTTCAATCTGTGGGGACACAGCCCCCTGGTGCAGTTTTACCTGCAGAGACATCGCGGACACTCACAGACTGGGCTGGACTTTCTAGCCCAGCAGCACGGTGAGGCGCTCCGGAGGGCGGCCAGGGACCTGCAGGCGCAGCACGCCCAAGACCTGGCCAGCCTGCACCGCGCACAGCTGTCCGAGCGGCAGGAGCTCATCAGaaaagagaagaaactgTTGTCTCAAAAACGCACCGTCAAGAGACTGTGCCAACTGCTGGTGCCAGACGATAAAGATGTCGAGGCCAAGTCTCGCTCTGAGGTGGCCCTGGCCTTCGAAGCCGCCCTGCAGGCCCAAGACTGATGCTTACGAGCTGCTAATCGCTGGGCCTGATGGGAGTCCAAAGATTGACCAATCGCTGTGTAGAAATCTGAGCTACTGGGGGGGTGGATGATCAATAaagaatgggaaaataaatcttcG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71955 lncRNA downstream 138197 40339347 ~ 40343479 (-) True G57545
TU71933 lncRNA downstream 322068 40159397 ~ 40159608 (-) True G57524
TU71768 lncRNA downstream 607447 39873971 ~ 39874229 (-) True G57400
TU71735 lncRNA downstream 674749 39806635 ~ 39806927 (-) True G57379
TU71703 lncRNA downstream 892765 39588686 ~ 39588911 (-) True G57354
TU72026 lncRNA upstream 228179 40721431 ~ 40777084 (-) True G57596
TU72031 lncRNA upstream 439713 40932965 ~ 40933210 (-) True G57600
TU72239 lncRNA upstream 1321349 41814601 ~ 41815807 (-) False AMCG00009571
TU72308 lncRNA upstream 1547947 42041199 ~ 42056128 (-) False AMCG00009582
TU72332 lncRNA upstream 1680006 42173258 ~ 42175707 (-) True G57858
AMCG00009527 mRNA downstream 1609 40472636 ~ 40480067 (-) True AMCG00009527
AMCG00009528 mRNA downstream 9074 40457807 ~ 40472602 (-) True AMCG00009528
AMCG00009520 mRNA downstream 301441 40178486 ~ 40180235 (-) True AMCG00009520
AMCG00009518 mRNA downstream 314175 40160222 ~ 40167501 (-) True AMCG00009518
AMCG00009521 mRNA downstream 324228 40121463 ~ 40157448 (-) True AMCG00009521
AMCG00009532 mRNA upstream 1947 40495199 ~ 40495887 (-) True AMCG00009532
AMCG00009537 mRNA upstream 266643 40759895 ~ 40833267 (-) True AMCG00009537
AMCG00009538 mRNA upstream 340112 40833364 ~ 40851566 (-) True AMCG00009538
AMCG00009540 mRNA upstream 499195 40992447 ~ 40994537 (-) True AMCG00009540
AMCG00009546 mRNA upstream 641062 41134314 ~ 41137031 (-) True AMCG00009546
TU71924 other downstream 324205 40148725 ~ 40157471 (-) False AMCG00009521
TU71520 other downstream 1644112 38835316 ~ 38837564 (-) False AMCG00009472
TU71449 other downstream 1898856 38580285 ~ 38582820 (-) True G57155
TU70990 other downstream 3261600 37215960 ~ 37220076 (-) True G56800
TU70712 other downstream 4609079 35872123 ~ 35872597 (-) True G56568
TU72548 other upstream 2175875 42669127 ~ 42673707 (-) True G58025
TU72928 other upstream 2989169 43482421 ~ 43945297 (-) True G58333
TU73015 other upstream 3496259 43989511 ~ 43995654 (-) True AMCG00009672
TU73231 other upstream 4015001 44508253 ~ 44512249 (-) False AMCG00009697
TU73235 other upstream 4048642 44541894 ~ 44542809 (-) True G58584

Expression Profile