RNA id: AMCG00009540


Basic Information

Item Value
RNA id AMCG00009540
length 2091
RNA type mRNA
GC content 0.57
exon number 1
gene id AMCG00009540
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 40992447 ~ 40994537 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACATTACGATTGGAGACGGTGAAGAGGTGGCAGCTGGAGCTGCATTCTGCTCAGGACTGGTTGCAGTACGAAGTCGGCATCGATGGCTGCAATGTGGTCAAGATTCAGTGTGCCCTGTGCAACAAGCACAAAGCCAAGATCAAAGACCTGCGCAACTTCAGCCCGGCCTTTGTTAACGGCATCGAGGGCAACTCTTTAAAAAAGGACAACGTGAAGAAGCACTTTCAGAGCGAGATGCACCAAAAGGCCTTGGCCCTGGAGAAGCTGAGTGGCAATATCCCCAACCTGCCCTCGGCACTCGCTCAGTCCATCGAAGAGAGCCATCTCACTCGGCTCTTCGATCTCGCCTACACGGTGGCCAAGCTGGAGCTGCCGCTGGCGAAGTTCAAGCAGCTGGCTAAGCTGGAGTTGCGCCACGGGGTGGACTTGGGCCAGACGGCCATCACCGAGCAGAAGTGCAAGGAGTACATCGACTACATCGGCCGGTCCACCAGGACGGAACTCGTGCACGCCATCCAGGAGGCCCCGTACTTCTCGGTTGTGGTCGATGGCTCAGCTGATCCAGGGATGACCGAGAAAGGCATGGTCTATGTGCTGTACGTGGACCGCACCGGTCTGCCCTGCATGCGGTTCTTCGGTTTCCGGGAGGTGGAGCACGTGCATCCAGAGTGCCTGAAGCGGACTGTGCTCAACGCCTTCTTAGAGGAGGGCGTTGACATCGAGCGGAAGCTGGTGGGCTACATGGCAGATGGCAGCACTGTGAAGGCGGACATTACTGCTCTCCTGCAGAAGGATATGCCTTATCTCATCTCCCTCAGCTGCGTGAGTCATCGCCTGGAGATGGCCCTCAAGGAGATGTTCCACGGCACCAGTTTCGACAACGTCAATGAAATGCTCCTCCTCCTGGGCAAGCTGTACTGGACCTGCCCCAGTCGCATGCACGAGCTGAAGACCCTGGCGCAGGTAATGCTGGAAGCCGAGACCAAGCCCCATCAGGCTGAAGGAACCCGCTGGGTGCAACACAAGCAGCGCGCCACCAGGGCTCTGCTGCAGGCATACCCAGCAGTTGTCTGTAACCTGACCAACATGTCTGCCCAAACAGCCCTGCCCAAAGAGAAGACCATCTTCCAGGAGTACCTGAGGACCCTGCGGAGCCTCAACTTTGTCCTTCACTTGCTCCTCTTCTCTGAGATGCTGGAGCCCATCGCCAAGCTGTCCCGTTCGTTGCAAAATAGCAACGTGGACCTAGTGTACACCGCCTCTCTGCTGGAGAAGTTCTACAGCACCCTGGCACGCTTCAGCATGGGCATTCTCCACGGCTCCCTCCACGAGCTGTTGGACGACATGGCGAAGGACCCCCAGTCAGTTTACTTCAGCGGCACCCGATTGCAGTGTGAAGCAGAGGCAGCCCAGGCGTTCAAGGATAAGCTTCCAACGTACGTGGCTGCAGTGTCCGGCTGTATCCTCCAACGCTTCGGGGCCCTACATCAAATGGAGCCCATCCGCTGCCTGAAGATCTTGGAGGCTGACCTGTGGCCTGAAACCAAGGAAGACATGGAGAACTTCGGCAACGCAGAGCTTCAGATATTCTGCCGCCACTTTGCCAAGCTCCTGTCACTCAACCAGGTGGACATCACCAAATTGCTGGAGGAGTGGGAGCAGTTCAAGCAGCTCCGCTCCTCGTGCCTGGCTGAGCTCTCCAGTCAACAGATGTGGCAGAATATTTTGACCAGAGAGCGGGCACGCTTTCCCAACTTCTACCATGTCATCCACATCCTCCACTGCTTTCCCGTGTCCAGCGTGGTGCTGGAGTGGGGCTTCTCCGCTGTAGCCCGCCTGAAGGCCGAGAGCAGGGGCAAGATGTCCATCAGCACCCTGGAGTATCTGACCAGGATCTCGGTGGAGGGCCCTGAACCGGATGTCTATGATCCCCAGGCTGCTGTCAGCCTGTACTGTTTTGAGCAGATGGGCTTCATCTCTGAGCCTGCTGTCAAAAGATCATCCATGTGTGCGTTCCTGGGTGAAGAGCCTAGTTCTCCAAATAAAAAGGCCTGCTTAACTCCTGAGGAGTACAGCAGTGACGGATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72031 lncRNA downstream 59237 40932965 ~ 40933210 (-) True G57600
TU72026 lncRNA downstream 215363 40721431 ~ 40777084 (-) True G57596
TU71955 lncRNA downstream 648968 40339347 ~ 40343479 (-) True G57545
TU71933 lncRNA downstream 832839 40159397 ~ 40159608 (-) True G57524
TU71768 lncRNA downstream 1118218 39873971 ~ 39874229 (-) True G57400
TU72239 lncRNA upstream 820064 41814601 ~ 41815807 (-) False AMCG00009571
TU72308 lncRNA upstream 1046662 42041199 ~ 42056128 (-) False AMCG00009582
TU72332 lncRNA upstream 1178721 42173258 ~ 42175707 (-) True G57858
TU72348 lncRNA upstream 1210733 42205270 ~ 42205559 (-) True G57873
TU72494 lncRNA upstream 1473648 42468185 ~ 42468759 (-) True G57982
AMCG00009538 mRNA downstream 140881 40833364 ~ 40851566 (-) True AMCG00009538
AMCG00009537 mRNA downstream 159180 40759895 ~ 40833267 (-) True AMCG00009537
AMCG00009532 mRNA downstream 496560 40495199 ~ 40495887 (-) True AMCG00009532
AMCG00009531 mRNA downstream 499195 40481676 ~ 40493252 (-) True AMCG00009531
AMCG00009527 mRNA downstream 512380 40472636 ~ 40480067 (-) True AMCG00009527
AMCG00009546 mRNA upstream 139777 41134314 ~ 41137031 (-) True AMCG00009546
AMCG00009547 mRNA upstream 145903 41140440 ~ 41155910 (-) True AMCG00009547
AMCG00009548 mRNA upstream 165362 41159899 ~ 41167236 (-) True AMCG00009548
AMCG00009545 mRNA upstream 176777 41171314 ~ 41175326 (-) True AMCG00009545
AMCG00009549 mRNA upstream 259285 41253822 ~ 41254538 (-) True AMCG00009549
TU71924 other downstream 834976 40148725 ~ 40157471 (-) False AMCG00009521
TU71520 other downstream 2154883 38835316 ~ 38837564 (-) False AMCG00009472
TU71449 other downstream 2409627 38580285 ~ 38582820 (-) True G57155
TU70990 other downstream 3772371 37215960 ~ 37220076 (-) True G56800
TU70712 other downstream 5119850 35872123 ~ 35872597 (-) True G56568
TU72548 other upstream 1674590 42669127 ~ 42673707 (-) True G58025
TU72928 other upstream 2487884 43482421 ~ 43945297 (-) True G58333
TU73015 other upstream 2994974 43989511 ~ 43995654 (-) True AMCG00009672
TU73231 other upstream 3513716 44508253 ~ 44512249 (-) False AMCG00009697
TU73235 other upstream 3547357 44541894 ~ 44542809 (-) True G58584

Expression Profile