RNA id: AMCG00009545


Basic Information

Item Value
RNA id AMCG00009545
length 1462
RNA type mRNA
GC content 0.49
exon number 7
gene id AMCG00009545
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 41171314 ~ 41175326 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GATCTGGCCAACCCTGCGCACCGTTATAACGAGTGCTGCTTTCTCTGCGCATGCGTGGAAGCCGGCGCTTGCGCAGTGGACGAGATTCAGTAGGATCGTGAGGGCGGCTCGACCGGCGATCTTCATAATGTCAGAAGAACTGAAGTCCACCAACGGCCCCTTGGAACAGTTCATTTTActtgcaaaaaacacaaaaggaccAGCCCTCATTGCTCTCATTAACCAGCTGCTAGAAGCACCAGGAGTCTACGTCTTTGGAGAGTTCCTCAATTTATCCTGTGTGGAGGAACTTTCAAAAGGGCCCAACCAGGGATATTTCCAGCTCTTGAACTTGTTTGCTTACGGCTCGTACGTAGATTACACAGCAAATAAGGACACGCTGCCCGTTTTATCCGATGCTCAGAAGATCAAATTGAAACATCTGACTATTGTCCACTTGGCAGAAAAAATGCAGCAGTGCATTCCGTACTCGGTGCTGATGAGGGACCTCGAGATGCCGACAGTCCGAGCGCTGGAGGACCTGATCATCGACGCCGTCTACACCGACGTCATCCGCGGCAAACTGGACCAGTGCAGACAGCTGCTGGAGGTGGATGACTGCATCGGCCGGGACATCCAGGAACGGGATATCGGCAGCATCACCAACACGCTCAGCCAGTGGTGCGCCGGCTGCGAATCCGTCTCCTCGGCCATCGAGCTGCAGGTCAACAGGGTCACCGAGTGCCGAGCGACTCACCTCAAAACCCAGCAGCAGCTCGAGGCAGAAGTGGCTGAGATCAAGACGACGCTAAAGGCCGCCGCTGCGCCCTCTTCACAGGAGGCCGACCCCCACGTGATGGAGCAAGAGGACGAACCGAGCGGCGAGCGCCAGCCCTGCCTGAAGATGATCACCAAGGTGAAGGAGTTCCTGAACATCCGACACTGAGGCTGCAGGCTGAAGCCACCGCGGCCCGCTTTTTCACAACCGAATAAACGCAAAGAACGGCCAGTGCGTTTATCTTTATTTCTTCTGCTTGCATGCATGTGCATTTGATGCTTGTTCTAGTACTTTCCTAGATTCTGAAATGTGGGTATTAGTTTTCAGCACAAAGTATTAGACATTAGTAATTGTAGTGTGACTGAGAGTGTAGGTGTGGCTCGGACCTGCAGAAATAGTATGTTTTTGTCTATATATagtattcattttgatttttgatCTCTATGAAAtgctctttttgtgttttatatgtcGGTGTTTCATGGTTTCTTGACCTCACGGCCAACTTTAAAGTGGTGAAAACTTATTTGAGCATACATTGAATTTTTGTGTGACTGACtaatgcaagaaaaacaaaaaacaaatctgtgtctGTAGTGGGtaatgtttgctttatttttccattatttcacTTCAAAAGGTCTTCTGTCTCACATTCAAGTTATTCAAAGCAAACAGATTGGAGGTTTTGATGGGATTTGATGG

Function

GO: NA

KEGG:

id description
K12180 COPS7, CSN7; COP9 signalosome complex subunit 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72031 lncRNA downstream 238104 40932965 ~ 40933210 (-) True G57600
TU72026 lncRNA downstream 394230 40721431 ~ 40777084 (-) True G57596
TU71955 lncRNA downstream 827835 40339347 ~ 40343479 (-) True G57545
TU71933 lncRNA downstream 1011706 40159397 ~ 40159608 (-) True G57524
TU71768 lncRNA downstream 1297085 39873971 ~ 39874229 (-) True G57400
TU72239 lncRNA upstream 639275 41814601 ~ 41815807 (-) False AMCG00009571
TU72308 lncRNA upstream 865873 42041199 ~ 42056128 (-) False AMCG00009582
TU72332 lncRNA upstream 997932 42173258 ~ 42175707 (-) True G57858
TU72348 lncRNA upstream 1029944 42205270 ~ 42205559 (-) True G57873
TU72494 lncRNA upstream 1292859 42468185 ~ 42468759 (-) True G57982
AMCG00009548 mRNA downstream 4078 41159899 ~ 41167236 (-) True AMCG00009548
AMCG00009547 mRNA downstream 15404 41140440 ~ 41155910 (-) True AMCG00009547
AMCG00009546 mRNA downstream 34283 41134314 ~ 41137031 (-) True AMCG00009546
AMCG00009540 mRNA downstream 176777 40992447 ~ 40994537 (-) True AMCG00009540
AMCG00009538 mRNA downstream 319748 40833364 ~ 40851566 (-) True AMCG00009538
AMCG00009549 mRNA upstream 78496 41253822 ~ 41254538 (-) True AMCG00009549
AMCG00009553 mRNA upstream 242425 41417751 ~ 41425073 (-) True AMCG00009553
AMCG00009557 mRNA upstream 322785 41498111 ~ 41501769 (-) True AMCG00009557
AMCG00009561 mRNA upstream 340162 41515488 ~ 41542000 (-) True AMCG00009561
AMCG00009558 mRNA upstream 369579 41544905 ~ 41562147 (-) True AMCG00009558
TU71924 other downstream 1013843 40148725 ~ 40157471 (-) False AMCG00009521
TU71520 other downstream 2333750 38835316 ~ 38837564 (-) False AMCG00009472
TU71449 other downstream 2588494 38580285 ~ 38582820 (-) True G57155
TU70990 other downstream 3951238 37215960 ~ 37220076 (-) True G56800
TU70712 other downstream 5298717 35872123 ~ 35872597 (-) True G56568
TU72548 other upstream 1493801 42669127 ~ 42673707 (-) True G58025
TU72928 other upstream 2307095 43482421 ~ 43945297 (-) True G58333
TU73015 other upstream 2814185 43989511 ~ 43995654 (-) True AMCG00009672
TU73231 other upstream 3332927 44508253 ~ 44512249 (-) False AMCG00009697
TU73235 other upstream 3366568 44541894 ~ 44542809 (-) True G58584

Expression Profile