RNA id: AMCG00009547


Basic Information

Item Value
RNA id AMCG00009547
length 2958
RNA type mRNA
GC content 0.53
exon number 22
gene id AMCG00009547
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 41140440 ~ 41155910 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCCTGGGCTCGAAATCAAGAGGAGCGCCTCATCAACCACTTGTTCAAGGAGCGTGCTTACAACAAGGAGCTGCGGCCGGTCAAAAACAAAGACGATGTTGTGGATGTCTACCTGGCTCTCACGctctccaacctcatctctctcGGTTGGTATGATCACAGGCTGTCGTGGAACGCCAGTCTGTTTGACGACATCGAAgtcctgcacctgccttcccagctCGTGTGGCTCCCAGAGATTGTCTTGGAGAATAAGCAAGTATTCCCTGTACATAATGAAGGAAGATGTTATATGGAGGCCCTTCTCAATGACGCCCAGTTTCAGGTGGCCTACTACTGTAACGTCCTGGTCTATCCTGATGGATTCGTGTACTGGCTTCCCCCCGCAATCTATCGCAGTTCCTGTGCCATCAATGTGAACTTTTTCCCCTTCGACTGGCAGAACTGCACTCTGAAGTTCAGGTCCCTGACTTACAATGCCAAGGAGATTAGTATGCACCTGAAAGTGGATACAGACCTGGAAACAAACAGGAATTTCCCAGTCGAGTGGATTATCATTGACCCTGCTGGGTTTACAGAAAATGGTGAGTGGGAGATCATCCACAAACCCGCCAGGAAGAACATTCACAAGGAGGTTCCCCTGGACAGCAACAAACACCAAGACATCACCTTCTACCTCATCATCAAGCGCAAGCCTCTCTTCtacatcatcaacatcatcattcCTTGCATCCTCATCTCCTTCATGGCTTCCCTCGTCTACTACCTCCCAGCAGACAGTGGGGAGAAGATGACCCTGTCTATCTCCGTGCTCCTCGCTCAGTCTGTCTTTCTGCTTCTGGTGTCTCAGCGTCTACCCGAGACATCCCTCGCCATCCCCCTCATTGTTAGGTATCTCATGTTCATCATGGTGCTGGTCACGGTGGTGGTGCTGAACTGTGTGGTCGTGCTCAATCTGCACTTCCGGACGCCCAGCACTCATGTCATGTCTAAATGGACCAAAAAGTTCTTCCTGGAGAGGCTGCCGCGGATCCTGCACATGTCACAGCCGGCGGAGAGTGAGGCAAGCTGGGAGGGGGCCCTGCAGCGGCGCTCCAGCTCCGTCGGGTACATCGCCAAGGCGGACGAGTACTACAGCGTCAAGTCCCGCAGCGAACTGATGTTCGAGAAGCAGTCCGAGAGGCACGGGATGACCGCCAGGGCCACTCCGGCCGCAGTTTACAAATCGAACACAGAGGGCGAAGTCGCCGATCAGCTGTACGCCGAAATCAAACCCGCGGTGACCGGTGCCAATTACATCGTCAAGCACATGCGGGAGAAAAACGACTACAATGAGGAGAAGGACAACTGGAGTGGCATTGCCCGGACGGTGGACCGGCTGTGTTTCTTCGTCGTGACCCCCATCATGACCCTCGGGACCATGTTCATATTCCTGTCTGGGATTTACAACCACCCGCCTCCTCTGCCCTTCGAGGATGATGCGCCTACTGAAGAGAGGCTGCTGAAGGACATGATGACAGGCTACAACAAGAACATCCGCCCCGTGGAGAAGGACGGGGACGTCACCCAGGTCACACTGAAACTGACCCTCACTAACCTCGTCTCACTGAATGAACGAGAAGAGGCTCTCATGACCAACGTCTGGATCGAAATGCAATGGTGTGACTATCGGCTGAAATGGAACACCTCTCTGTACGACGGCATCGACATCATCAGAGTCCCCTCCAAAAGCATCTGGCTGCCCGACATCGTGCTGGAGAACAACGTTGATGGCAAATTTGAGATCACTCTTTACACCAACGCCCTCATTGACTCCTCCGGTTGCATCTACTGGCTTCCGCCTGCCATCTACCGCAGTGCCTGCTCCATCAAAGTCACTTACTTCCCCTTTGACTGGCAGAACTGTTCCATGGTTTTTCGCTCGCAAACGTACAGCGCCAATGAGATTGACCTTGTCTTGACAAACGAAGAAGGTCGGACCGTTGAATGGATCGTGATCGACCCAGAAGCCTTCACAGAGAACGGGGAATGGGCGATCAAGCACAGACCAGCCAAGAAGCTCATCAACAGCCACTACAGCAAGGACGACCTCGAGTACCAGGAGGTGATCTTCTTCCTCATCATCCAGAGGAAGCCACTCTTCTACATCATCAACATGATCGTGCCTTGTGTGCTCATCTCTTCCCTGGGGCTTCTGGTCTACTTCCTGCCTGCTAAAGCGGGCGGGCAGAAGTGTACGATGTCTATCTCCATCCTCCTTGCACAGACTGTATTCCTCTTCCTCATCGCCCAGAAGGTACCTGAGACCTCCCAGGCTGTGCCCCTCATTGGGAAGTTTCTGATGTTTGCAATGACAGTGACCACCATCGTGGTGATGAACTGCGTCATTGTGCTCAATGTGTCTCTCCGGACACCCAGCACCCACATCATGACCAATGATGTCAGACAGATCCTCCTGAATTTCGTGCCACGTCTCCTGAGAATGCAGATGAGTCTCTGGTCCCCAAAGGATGCCCAGCCATGCCCGACCTCTCGGCGCCGGAGCTCCCTGGGCTTGATCGCCAAGGCGGACGAGTACGTGCTGAAGACGGCGCGCACCGAGCTCATGTTCAGACAGCAGATCGCAAGAGAGGGGCTCATGAAGTCTGTGCTGCAGAAGATCCAAAATGGTCTGGAGGGGGGCACAGTTCAAGACCTAAGCAACAGCCTGGCACAAGCCAGCCCGGAGGTGCGCCAGTGTGTGGCATCCTGTAACCATATTGCCACCAGTATCCAGAAGCAAAATGACTTCCAGAACGAGAATGAAGAATGGTTCCTCGTGGGCAGAGTGGTTGACAGGGTGTGTTTCTTGGTGATGGCATTGCTTTTTGCCCTCTCTACTGTCGGCATATTCCTCATGGGACACTTTAACCAAGCGCCTTCCACACCCTTCCCTGGAGATCCCAATAGATACCTGCCT

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0007271 synaptic transmission, cholinergic biological_process
GO:0006812 cation transport biological_process
GO:0007165 signal transduction biological_process
GO:0045211 postsynaptic membrane cellular_component
GO:0005892 acetylcholine-gated channel complex cellular_component
GO:0030054 cell junction cellular_component
GO:0015464 acetylcholine receptor activity molecular_function

KEGG:

id description
K04818 CHRNG; nicotinic acetylcholine receptor gamma

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72031 lncRNA downstream 207230 40932965 ~ 40933210 (-) True G57600
TU72026 lncRNA downstream 363356 40721431 ~ 40777084 (-) True G57596
TU71955 lncRNA downstream 796961 40339347 ~ 40343479 (-) True G57545
TU71933 lncRNA downstream 980832 40159397 ~ 40159608 (-) True G57524
TU71768 lncRNA downstream 1266211 39873971 ~ 39874229 (-) True G57400
TU72239 lncRNA upstream 658691 41814601 ~ 41815807 (-) False AMCG00009571
TU72308 lncRNA upstream 885289 42041199 ~ 42056128 (-) False AMCG00009582
TU72332 lncRNA upstream 1017348 42173258 ~ 42175707 (-) True G57858
TU72348 lncRNA upstream 1049360 42205270 ~ 42205559 (-) True G57873
TU72494 lncRNA upstream 1312275 42468185 ~ 42468759 (-) True G57982
AMCG00009546 mRNA downstream 3409 41134314 ~ 41137031 (-) True AMCG00009546
AMCG00009540 mRNA downstream 145903 40992447 ~ 40994537 (-) True AMCG00009540
AMCG00009538 mRNA downstream 288874 40833364 ~ 40851566 (-) True AMCG00009538
AMCG00009537 mRNA downstream 307173 40759895 ~ 40833267 (-) True AMCG00009537
AMCG00009532 mRNA downstream 644553 40495199 ~ 40495887 (-) True AMCG00009532
AMCG00009548 mRNA upstream 3989 41159899 ~ 41167236 (-) True AMCG00009548
AMCG00009545 mRNA upstream 15404 41171314 ~ 41175326 (-) True AMCG00009545
AMCG00009549 mRNA upstream 97912 41253822 ~ 41254538 (-) True AMCG00009549
AMCG00009553 mRNA upstream 261841 41417751 ~ 41425073 (-) True AMCG00009553
AMCG00009557 mRNA upstream 342201 41498111 ~ 41501769 (-) True AMCG00009557
TU71924 other downstream 982969 40148725 ~ 40157471 (-) False AMCG00009521
TU71520 other downstream 2302876 38835316 ~ 38837564 (-) False AMCG00009472
TU71449 other downstream 2557620 38580285 ~ 38582820 (-) True G57155
TU70990 other downstream 3920364 37215960 ~ 37220076 (-) True G56800
TU70712 other downstream 5267843 35872123 ~ 35872597 (-) True G56568
TU72548 other upstream 1513217 42669127 ~ 42673707 (-) True G58025
TU72928 other upstream 2326511 43482421 ~ 43945297 (-) True G58333
TU73015 other upstream 2833601 43989511 ~ 43995654 (-) True AMCG00009672
TU73231 other upstream 3352343 44508253 ~ 44512249 (-) False AMCG00009697
TU73235 other upstream 3385984 44541894 ~ 44542809 (-) True G58584

Expression Profile