RNA id: AMCG00009548


Basic Information

Item Value
RNA id AMCG00009548
length 2691
RNA type mRNA
GC content 0.61
exon number 15
gene id AMCG00009548
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 41159899 ~ 41167236 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTGCTGCTCGCTCTGCTGCTGATTTTGGACTGCACTTCTGCTGCACCTACAGGCAGGGAGGTCTACAGACTGCCCCAAAGCGCTCTGCAAGGCCTATCGGAGCGTGGCACTGTGGTGCTGGAGGCGGCCCTGACCAGCGCCCTGTCCGCCCTGGAGCTGGCCGTGTCGGAGCACAGCCGGGCTGAGCTGGGCTGTGGGGGCTGTACTCCGTGTCTCTTTCAGGACTGTGGACAGCGCAGTGGCCCCTGTGCCCATGTGGATGTGCCTTCGGAGCCCAGCTGCGAGGTGATTGCCCAAGCCCAGAGGCAGCCGGATGAGAGGGATCGCAACTGGGCGCTGAGCCAGGCCTGTGGGTACTACCAGCGACGGTGCCATGCTGAAGAGGTGGGCAAAGAGAGCTGTGTCCGGATCATGGGCGAGAGCTGCAGTGCCCGCGTCCTCCAGTGCAGTTTGCTGAACACCATGCAAAACTTGGAGCCGGTGGCAGAGAGCAAGAGTCAAGGTAAATCAGTCTTATATACAGTCTGTAACCAGCGATGGCGCTACACGTTCTGCCTCCTGTCTCTTCTGAACATTAACCGGGCTGGTTCTCGTCTCTTGGCAGTGTGTGGCCGGAAGTCGGTGGCCATGCAGAATGTCACCCAGCCTCGCTCCAGGATTGTGGGGGGCTCTCAGGCCTCCCCCGGCAGTTGGCCCTGGTTAGTCAATCTGCGGCTGGATGGCGAGCTCATGTGCGGGGCAGTGCTGGTGGACAGCTCTTGGGTGTTGACGGCTGCGCACTGCTTTACGGGgAGCCGCAGTGAGAATTATTGGACCGCAGTGGTGGGGGAGTTTGACATCACAAAGACGGACCCTGAGGAGCAAGTCATGAAGGTCAACCGCATCGTCACTCACCCCAAGTTCAACCAGAAGACCTTCAACAACGACATCGCCCTGGTAGAGCTGACGTCTCCTGTTGCGCTCTCTGATCAAGTGACCCCAATTTGCCTGCCCTCAGGTGAAGAGCCCGCTGTGGGGACGCCTTGCTCTGTGGCTGGCTGGGGCTCACTGTATGAGGACGGCCCCTCTGCCGATGTGGTGATGGAAGCCAAGGTGCCCATTCTGTCTCAGGGCACCTGTAAAAGTGCCCTGGGCAAGGAGCTGGTCACCAACACCATGTTCTGTGCCGGCTACCTGTCTGGCGGCATCGACTCCTGCCAGGGGGACTCGGGGGGCCCGTTGACCTGCCAGGACCGCGTCTCTGGGCGTTTCCAGTTGTACGGTATCACATCCTGGGGGGACGGCTGCGGGGAGAAGGGGAAACCCGGGGTGTACACCCGAGTCACGGCCTTCTCTGACTGGATCCACAGTGAGATACAGAAGTCCACTGGCAGCCGGGAGCCCACCTGCCCAGAGCTGCTGCAGACGTCCGAGCTCTCCGAGGAGCAGCAGAGGTCGGAGTTCAGTACCTTGTGCCGCTTTTACACCCACTCCTGCCCGCCCTCACTGGGCACGGCCGCCTGCACCCGCCTGGCTGAGGACAAGTGCCGCACCCGCTACAAGAAGTGTCAGCTGCGGTCGTTCCTGCAGACCCTGCTGGACCTCCTGCAGCGCGCGGAGGAGTATATCCGAGACAAGGTGGACCTGACCTTCTTCACGCAGACGTTGCCTCGGCTGGTCGAGCACATCTACAGCACCGCCTTCCCCTCCCGGCAGCGCAGACGGGCCTCGCTCGAGACAGGTACAGAACTGGACGTGGGACCCCTTGTTGAGGACTGGGCCACATATCTGAGAAGAATCGCAGAGGATCTGGACAACCAGCCCGCTTTGCAGGGCCTGAAATCTCTGCAGCAGGAGAAGAGCCTCTTTCTACAGGCTGAGGCCCCCGCTCTTCCCACGCTGGAGGGACAATACCGCTCCCTGATCAAGATGCTCCACGCCAAGCTCGGCTCTGGGGTCCCCAGTTCGATCACAGACCAGAGCACGGGTCCTACACGAGACACTACAGTGGCAGAGCAGACCACCATTCCCGCCAGGACTCCCCCGCTCACCGCATCCCCCAAGATCAAGGGATCCGTCCTCACAACTTCACCACGAGGACTCCCAGCTGGAGAGCGAGCCAGAGCCGCGTCTCGGGGATCTGGCCTGGCGCGCGCGACGTCTCCGTCTGAAATCTACCGACGCGGTGTGACCAGAGAGTCCACCTTGGAATACAGACCCACTTCATCTGCCTCTTCATCGTCGTCTTCCTCTGACCCTGATATTCCTGTTGGAAGAGGATCGACCGTTTTCTCCTCTGTCCCTGCCTGGCCTAGTCCCGCTCTGCCACAGCAGGCCACGGACCCCACTTCCACAAAACCATCAGAGACAGTCTACCAGCGGCGCCGAGGCCTGCGAAAGAGACGGGCGTCCGGAACAAACCACGAAGTGTGCCCTGGAGTGAGCGAGACCTCGCAGCAGGTCAGTATGGTCAAGGAGATGTACCACTGGATCCTGGGCATCCCTATCAAGAACCTCTGCATGACTTTCCAAGAGGTACTGGTGGACCTCGCGTCCAAGAACGAGAGAGGTCTGTACGAGGCGCGGGTCCGGGCCACGGTGGGAGGACAGCCCCTCACCTTCTATAGCCTAGTGGGCCTGGAGAGTGAGTCGTTCTACCGCAGCATGCCGCGGGTCATCGCCCTGGCGCTGGAGGCCCTCAAGACGTAA

Function

GO: NA

KEGG:

id description
K23440 PRSS56; serine protease 56

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72031 lncRNA downstream 226689 40932965 ~ 40933210 (-) True G57600
TU72026 lncRNA downstream 382815 40721431 ~ 40777084 (-) True G57596
TU71955 lncRNA downstream 816420 40339347 ~ 40343479 (-) True G57545
TU71933 lncRNA downstream 1000291 40159397 ~ 40159608 (-) True G57524
TU71768 lncRNA downstream 1285670 39873971 ~ 39874229 (-) True G57400
TU72239 lncRNA upstream 647365 41814601 ~ 41815807 (-) False AMCG00009571
TU72308 lncRNA upstream 873963 42041199 ~ 42056128 (-) False AMCG00009582
TU72332 lncRNA upstream 1006022 42173258 ~ 42175707 (-) True G57858
TU72348 lncRNA upstream 1038034 42205270 ~ 42205559 (-) True G57873
TU72494 lncRNA upstream 1300949 42468185 ~ 42468759 (-) True G57982
AMCG00009547 mRNA downstream 3989 41140440 ~ 41155910 (-) True AMCG00009547
AMCG00009546 mRNA downstream 22868 41134314 ~ 41137031 (-) True AMCG00009546
AMCG00009540 mRNA downstream 165362 40992447 ~ 40994537 (-) True AMCG00009540
AMCG00009538 mRNA downstream 308333 40833364 ~ 40851566 (-) True AMCG00009538
AMCG00009537 mRNA downstream 326632 40759895 ~ 40833267 (-) True AMCG00009537
AMCG00009545 mRNA upstream 4078 41171314 ~ 41175326 (-) True AMCG00009545
AMCG00009549 mRNA upstream 86586 41253822 ~ 41254538 (-) True AMCG00009549
AMCG00009553 mRNA upstream 250515 41417751 ~ 41425073 (-) True AMCG00009553
AMCG00009557 mRNA upstream 330875 41498111 ~ 41501769 (-) True AMCG00009557
AMCG00009561 mRNA upstream 348252 41515488 ~ 41542000 (-) True AMCG00009561
TU71924 other downstream 1002428 40148725 ~ 40157471 (-) False AMCG00009521
TU71520 other downstream 2322335 38835316 ~ 38837564 (-) False AMCG00009472
TU71449 other downstream 2577079 38580285 ~ 38582820 (-) True G57155
TU70990 other downstream 3939823 37215960 ~ 37220076 (-) True G56800
TU70712 other downstream 5287302 35872123 ~ 35872597 (-) True G56568
TU72548 other upstream 1501891 42669127 ~ 42673707 (-) True G58025
TU72928 other upstream 2315185 43482421 ~ 43945297 (-) True G58333
TU73015 other upstream 2822275 43989511 ~ 43995654 (-) True AMCG00009672
TU73231 other upstream 3341017 44508253 ~ 44512249 (-) False AMCG00009697
TU73235 other upstream 3374658 44541894 ~ 44542809 (-) True G58584

Expression Profile