RNA id: AMCG00009550


Basic Information

Item Value
RNA id AMCG00009550
length 1130
RNA type mRNA
GC content 0.45
exon number 3
gene id AMCG00009550
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 41433263 ~ 41435199 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTCTGATGCCTCACAGTGGGGCTGATCAGTTCCTCTGTTGTTCCATAGTGTTTTACAAGGCAAACAGGATGGCATTGGCCGGGATTTCATGGCAGAGCTTCACTGGGACTCTGAGCAGACTGGAACGCAAATTAGACTCCATAAATGCCCAATTCGAAGAACTGGACGAGACAGCGAAGTTGCTGTCCGAACGTCTGGAGAAGCACAGACAGGTTCTGGCCAGCCAGTCCGATCAGGACGAGGTGTGGGCTTCACTGCTGGAGGACAGGTTCACAGTAGTGGAAACCaatcttttcttctcctttgtGGTGGAAACTTTCCGCTGCTGCCACTCTCGGGTGGTGGAGAAACTGCCAGATTTAATCAACAGCCTACCCACCGTGGCCTCCATCCTCCGGAGGAAGATCAAAAACCGGCGAATCGATGTGGCCTGGGAGTCCACGCTGAGAGACCTGGGCCTGGACAACTCCGATGCCAAGGCCCTGTGCGCGTTCTTCGTGGCCCAGGGCTATGAGGCGGAGTATTACTGCCCCAGGGAGAGGCAGAAATACGCAGATGATGTGGACATGCTCATCAGGAAAGTGGTTCGGAACCAGGTTCTGAGGGACAGCCTGCTCCGGGCTGTGCAGGTCGTGGAGAAGGGAAAGGCTGGAGACATTTCGGAAAAGCCTTCTGACTCTGAGCAACAGAAACCCACCACCTCTATCAGAGAGCAGATTTGTGAACAGACGAACCCAAgctgatttctgtattaaataccatttattttaaagaccagtatttcatttgtattagtAAGCAGTTAAACATGTTAATTTGctcatatattttgaaaatatgtatctttTAGTTCAGATTTATTTGTGAGCGCAGCTAACAACCAggtttacaaatgcattttgctaTGACTTGTTGCATAATGAATGCATTGttagaaactgacatgaataCAGATAATTGAATATGATAATATGCCTTAGCCAATAGAAGACTAATACTGTCGTTGCAGTCGATTCATTTGAAGTAAACCGGACTGTGTAAAATTGTGACTGacacaatattgtattatatcaaAGGAGAAACATTGAaaagtgtaatattttaataaacaataaaaaacataaatgac

Function

GO:

id name namespace
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:1990351 transporter complex cellular_component
GO:0034702 ion channel complex cellular_component
GO:0034703 cation channel complex cellular_component
GO:0034704 calcium channel complex cellular_component
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:1902495 transmembrane transporter complex cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
ko04020 Calcium signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72030 lncRNA upstream 500053 40932967 ~ 40933210 (+) True G57599
TU72028 lncRNA upstream 603586 40829072 ~ 40829677 (+) True G57597
TU71954 lncRNA upstream 1089882 40339382 ~ 40343381 (+) True G57544
TU71932 lncRNA upstream 1273637 40159409 ~ 40159626 (+) True G57523
TU71839 lncRNA upstream 1399930 40030546 ~ 40033333 (+) True G57457
TU72136 lncRNA downstream 64765 41499964 ~ 41500218 (+) True G57690
TU72199 lncRNA downstream 161030 41596229 ~ 41599122 (+) True AMCG00009563
TU72228 lncRNA downstream 314356 41749555 ~ 41750144 (+) True G57770
TU72233 lncRNA downstream 380722 41815921 ~ 41817795 (+) True G57775
TU72251 lncRNA downstream 403966 41839165 ~ 41839466 (+) True G57792
AMCG00009551 mRNA upstream 19188 41405896 ~ 41414075 (+) True AMCG00009551
AMCG00009542 mRNA upstream 301149 41123722 ~ 41132114 (+) True AMCG00009542
AMCG00009544 mRNA upstream 315887 41116821 ~ 41117376 (+) True AMCG00009544
AMCG00009541 mRNA upstream 316518 41106713 ~ 41116745 (+) True AMCG00009541
AMCG00009543 mRNA upstream 341353 41091049 ~ 41091910 (+) True AMCG00009543
AMCG00009552 mRNA downstream 41338 41476537 ~ 41479996 (+) True AMCG00009552
AMCG00009555 mRNA downstream 50031 41485230 ~ 41498805 (+) True AMCG00009555
AMCG00009554 mRNA downstream 69795 41504994 ~ 41509847 (+) True AMCG00009554
AMCG00009562 mRNA downstream 125189 41560388 ~ 41568832 (+) True AMCG00009562
AMCG00009556 mRNA downstream 151467 41586666 ~ 41588754 (+) True AMCG00009556
TU72035 other upstream 438604 40990802 ~ 40994659 (+) True G57604
TU71881 other upstream 1328315 40102383 ~ 40104948 (+) False AMCG00009516
TU71802 other upstream 1484063 39948006 ~ 39949200 (+) True G57430
TU71670 other upstream 1996268 39434900 ~ 39436995 (+) True AMCG00009480
TU71381 other upstream 2975671 38442255 ~ 38457592 (+) True G57105
TU72303 other downstream 600819 42036018 ~ 42078241 (+) True G57830
TU72919 other downstream 2497753 43932952 ~ 43935762 (+) True G58324
TU73161 other downstream 2951298 44386497 ~ 44387964 (+) False G58522
TU73232 other downstream 3132166 44567365 ~ 44570531 (+) True AMCG00009694
TU73244 other downstream 3149363 44584562 ~ 44599328 (+) False AMCG00009700

Expression Profile