RNA id: AMCG00009552


Basic Information

Item Value
RNA id AMCG00009552
length 2164
RNA type mRNA
GC content 0.47
exon number 3
gene id AMCG00009552
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 41476537 ~ 41479996 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGCATAAAGGGAGTTCTATGCAGTCATCTGCGTTTCATGTGGATGGCTCTCATGGGCCTAACCGTGCTCTGTGTAACTATTCAGATACTGGGGGTGGCCCGACAATCCAGaaatgaCAAGGTTCTGAAGCAGTTTGCCAACAAGAAGTTTTTGAACATGAGGTTCAAGTTTGAATTCCAAAAGACGATGACAACCACACAGCAGGGGATCGAAGTGCCTCCTGACAAGTTTCCGTTTATAAAACACACCCAGCATCGGAGCAGGGAAACCACTCTGAACGAGGGACAAACCAAAAGAACTGAAAAACTCAGACATGGCAATAACACCACTAAGGAAGCGGAGAGCTTGATGGATTCACCTCCTCCTGTAACGCAAGATGATTCCCGACCTATCATATCGGTGCAGATTTTCAGTCCAACGCAACAGGCCATTCGTCCAATCAAAAAAAGCACGACAGCTATGACCCCGGAGAAGCCAAAAGAACTCAAAAAGGAAACAACTGCAGCTCGTGGTGAAGGCATCGTCAAGACAAGCCTTAGGTCAAGTTTAGGAAGTAATGGCATGAAGTATACAGGACCTCTAAAATCCACTGACCCCAATACCAGTGAGTTACCCTTTCAACCAGGATCATTGGTCAGACCACTTGAGCGGAAAGTGACCCTAAGACAGGTTGTTAGCCATTCagccaagaaaaacaagacGGTGTCTTCAAGGGTGCCAACAAAAACATTGTCCTCCATATCAGTGCAGGCCTCAGATGACCATTTCCCAGCATCTTTAGTCATAAATCcaaagaaagataaaatgttGCAAACAAAGGTCCTACACTCACAAGCATCTGTCTTTTCTGCAGCTACTTCTGTTCAACAAAACCTGCTTTCAAAAAACAGTTCCACAATGATAAAATCCACTGCTTTAAAACCAGACAGGGGAGTGGTATCCACTTGCCAGGCAAAGACACACATCGTGTTcctcaaaacacacaagacagcCAGCAGTACCATCCTTAACATTTTGTACCGGTTTGGAGACAGCAGAAACCTCACATTCGCTCTCCCCCTGAGCAGACACAATCAGCTGTTTTACCCGCTGTATTTTGCGGCTCCCTTTGTTGAAGGATTCAGGTCAAAGACCGTGAAGGGATATGACATTATGTGCAACCACATGAGGTTCCTGGCATCGGAGGTGAAGAAGGTCATGCCTCAAGATTCCTTCTACTTCTCCATTCTTCGCAACCCAATCACCATGATGGAGTCCATTTTCTCATATTACAAGAGCATTCCTTCATTCAACAAGGTACAAAACCTGGACGAATTCCTTACGAGCCCATGGCAGCACTACAACGCCAGCTTGACCAACAACCATTATGCCAAAAACCTGTTGACGTTCGATTTTGGCTTCAATAACAATGGCAACGATAGCCAGAGATACACTAACATGACCATCGTCATGATAGAGCAGAAATTCCACCTGATCTTGATCTCCGAGTACTTTGATGAGTCCATGATCCTACTGAAGAATGCTCTCTGCTGGACACTGGATGATGTGGTCTCCTTCAAGCTCAACAGCAGGAGCAACAAGACCAGGAAGGAACTGTCCCCTCAGGCCATGGAAAAGATAAAGCAGTGGAACTCCCTGGACTGGAAGATCTACATGCATTTCAACGCCACCTTCTGGAGGAGAATCGACGAGACGATGGGACGGGATGAAATGAAGCAAGAAGTGGCACGCCTTcaggagaggaggaggcagCTGATGAAGACATGTTTGCAGGAAGGAGGGGCTGTGGACCCTTCACAGATCAAAGACACCTCCCTGAAGCCCTTTCAGTACGGTGCCTCAGTCATTCAGGGATACAACCTCAACCCCCACCTGGACCCAGTGACCAGAAAATGGTGTCAGAGCCTCATCACACCTGAGCTGCAGTACACAGTCGTATTATATGACAAACAGTTTCCAGATTTAGCAGCCAAGCTGACTGCCACTGAAAATCGGTCAAGTAGAGACCAGGCCAGGACCAACCACTCAAGGAACTGGGAATCCAAAAAGGCCTTGACTAGTCAGAGACGGAATAATCAGTACGGGCCAAGAAATCATGTCCGTGTTCTTTACCAGAAAGACTTGACCAACTGGACTACACCAAGCAGCTTACAAAATGTGCCT

Function

GO: NA

KEGG:

id description
K09675 GAL3ST2; galactose-3-O-sulfotransferase 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72030 lncRNA upstream 543327 40932967 ~ 40933210 (+) True G57599
TU72028 lncRNA upstream 646860 40829072 ~ 40829677 (+) True G57597
TU71954 lncRNA upstream 1133156 40339382 ~ 40343381 (+) True G57544
TU71932 lncRNA upstream 1316911 40159409 ~ 40159626 (+) True G57523
TU71839 lncRNA upstream 1443204 40030546 ~ 40033333 (+) True G57457
TU72136 lncRNA downstream 19968 41499964 ~ 41500218 (+) True G57690
TU72199 lncRNA downstream 116233 41596229 ~ 41599122 (+) True AMCG00009563
TU72228 lncRNA downstream 269559 41749555 ~ 41750144 (+) True G57770
TU72233 lncRNA downstream 335925 41815921 ~ 41817795 (+) True G57775
TU72251 lncRNA downstream 359169 41839165 ~ 41839466 (+) True G57792
AMCG00009550 mRNA upstream 41338 41433263 ~ 41435199 (+) True AMCG00009550
AMCG00009551 mRNA upstream 62462 41405896 ~ 41414075 (+) True AMCG00009551
AMCG00009542 mRNA upstream 344423 41123722 ~ 41132114 (+) True AMCG00009542
AMCG00009544 mRNA upstream 359161 41116821 ~ 41117376 (+) True AMCG00009544
AMCG00009541 mRNA upstream 359792 41106713 ~ 41116745 (+) True AMCG00009541
AMCG00009555 mRNA downstream 5234 41485230 ~ 41498805 (+) True AMCG00009555
AMCG00009554 mRNA downstream 24998 41504994 ~ 41509847 (+) True AMCG00009554
AMCG00009562 mRNA downstream 80392 41560388 ~ 41568832 (+) True AMCG00009562
AMCG00009556 mRNA downstream 106670 41586666 ~ 41588754 (+) True AMCG00009556
AMCG00009563 mRNA downstream 116312 41596308 ~ 41599124 (+) False AMCG00009563
TU72035 other upstream 481878 40990802 ~ 40994659 (+) True G57604
TU71881 other upstream 1371589 40102383 ~ 40104948 (+) False AMCG00009516
TU71802 other upstream 1527337 39948006 ~ 39949200 (+) True G57430
TU71670 other upstream 2039542 39434900 ~ 39436995 (+) True AMCG00009480
TU71381 other upstream 3018945 38442255 ~ 38457592 (+) True G57105
TU72303 other downstream 556022 42036018 ~ 42078241 (+) True G57830
TU72919 other downstream 2452956 43932952 ~ 43935762 (+) True G58324
TU73161 other downstream 2906501 44386497 ~ 44387964 (+) False G58522
TU73232 other downstream 3087369 44567365 ~ 44570531 (+) True AMCG00009694
TU73244 other downstream 3104566 44584562 ~ 44599328 (+) False AMCG00009700

Expression Profile