Gene
RNA
| Item | Value |
|---|---|
| RNA id | AMCG00009556 |
| length | 1119 |
| RNA type | mRNA |
| GC content | 0.62 |
| exon number | 5 |
| gene id | AMCG00009556 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CM030126.1 |
| NCBI id | CM030126.1 |
| chromosome length | 46242406 |
| location | 41586666 ~ 41588754 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| species | bowfin (Amia calva) |
| id | name | namespace |
|---|---|---|
| GO:0006919 | activation of cysteine-type endopeptidase activity involved in apoptotic process | biological_process |
| GO:0043123 | positive regulation of I-kappaB kinase/NF-kappaB signaling | biological_process |
| GO:0016567 | protein ubiquitination | biological_process |
| GO:0030308 | negative regulation of cell growth | biological_process |
| GO:0051646 | mitochondrion localization | biological_process |
| GO:0000266 | mitochondrial fission | biological_process |
| GO:0005777 | peroxisome | cellular_component |
| GO:0031307 | integral component of mitochondrial outer membrane | cellular_component |
| GO:0004842 | ubiquitin-protein transferase activity | molecular_function |
| GO:0042802 | identical protein binding | molecular_function |
| GO:0004871 | obsolete signal transducer activity | molecular_function |
| GO:0008270 | zinc ion binding | molecular_function |
| id | description |
|---|---|
| K15688 | MUL1; E3 ubiquitin-protein ligase MUL1 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU72136 | lncRNA | upstream | 86448 | 41499964 ~ 41500218 (+) | True | G57690 |
| TU72030 | lncRNA | upstream | 653456 | 40932967 ~ 40933210 (+) | True | G57599 |
| TU72028 | lncRNA | upstream | 756989 | 40829072 ~ 40829677 (+) | True | G57597 |
| TU71954 | lncRNA | upstream | 1243285 | 40339382 ~ 40343381 (+) | True | G57544 |
| TU71932 | lncRNA | upstream | 1427040 | 40159409 ~ 40159626 (+) | True | G57523 |
| TU72199 | lncRNA | downstream | 7475 | 41596229 ~ 41599122 (+) | True | AMCG00009563 |
| TU72228 | lncRNA | downstream | 160801 | 41749555 ~ 41750144 (+) | True | G57770 |
| TU72233 | lncRNA | downstream | 227167 | 41815921 ~ 41817795 (+) | True | G57775 |
| TU72251 | lncRNA | downstream | 250411 | 41839165 ~ 41839466 (+) | True | G57792 |
| TU72317 | lncRNA | downstream | 496525 | 42085279 ~ 42088145 (+) | True | G57843 |
| AMCG00009562 | mRNA | upstream | 17834 | 41560388 ~ 41568832 (+) | True | AMCG00009562 |
| AMCG00009554 | mRNA | upstream | 76819 | 41504994 ~ 41509847 (+) | True | AMCG00009554 |
| AMCG00009555 | mRNA | upstream | 87861 | 41485230 ~ 41498805 (+) | True | AMCG00009555 |
| AMCG00009552 | mRNA | upstream | 106670 | 41476537 ~ 41479996 (+) | True | AMCG00009552 |
| AMCG00009550 | mRNA | upstream | 151467 | 41433263 ~ 41435199 (+) | True | AMCG00009550 |
| AMCG00009563 | mRNA | downstream | 7554 | 41596308 ~ 41599124 (+) | False | AMCG00009563 |
| AMCG00009564 | mRNA | downstream | 89798 | 41678552 ~ 41683695 (+) | True | AMCG00009564 |
| AMCG00009568 | mRNA | downstream | 186455 | 41775209 ~ 41784537 (+) | True | AMCG00009568 |
| AMCG00009569 | mRNA | downstream | 244117 | 41832871 ~ 41844457 (+) | True | AMCG00009569 |
| AMCG00009575 | mRNA | downstream | 313079 | 41901833 ~ 41910118 (+) | True | AMCG00009575 |
| TU72035 | other | upstream | 592007 | 40990802 ~ 40994659 (+) | True | G57604 |
| TU71881 | other | upstream | 1481718 | 40102383 ~ 40104948 (+) | False | AMCG00009516 |
| TU71802 | other | upstream | 1637466 | 39948006 ~ 39949200 (+) | True | G57430 |
| TU71670 | other | upstream | 2149671 | 39434900 ~ 39436995 (+) | True | AMCG00009480 |
| TU71381 | other | upstream | 3129074 | 38442255 ~ 38457592 (+) | True | G57105 |
| TU72303 | other | downstream | 447264 | 42036018 ~ 42078241 (+) | True | G57830 |
| TU72919 | other | downstream | 2344198 | 43932952 ~ 43935762 (+) | True | G58324 |
| TU73161 | other | downstream | 2797743 | 44386497 ~ 44387964 (+) | False | G58522 |
| TU73232 | other | downstream | 2978611 | 44567365 ~ 44570531 (+) | True | AMCG00009694 |
| TU73244 | other | downstream | 2995808 | 44584562 ~ 44599328 (+) | False | AMCG00009700 |
