RNA id: AMCG00009560


Basic Information

Item Value
RNA id AMCG00009560
length 5153
RNA type mRNA
GC content 0.52
exon number 20
gene id AMCG00009560
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 41574140 ~ 41584461 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCAGTCCGAAACGGAGCACGGTTTGCAAACATTGCTtttataaaatcacaataacCAGGAGTAGTCCAATGCGAATTAATGTAAGAACATGACGATATGACGCGATAGCTGTGCACCGATGCTGGCATTTTTTATcgtaacattattttacagtgagTGTCTTTATATCCTGAACTGTAATAATTACGGGTTGCACTGGGTTCTCGGCAGCTTTGAACAGTAAAGTACTGGAGTTATTCTGGCTGGTGAAGTGCTGGCGTGTTGGTCCTGCAGgtgaagatgttttttaaaGCTTCCAGCTGTTCCTCAGAGCAGCTCAGCTCCCCACCCAAGGGGACCTCTTTTTGCGGAGTCCCCTCTCAGATGGCGTCCTCCCTGCCCCTCGATGACAGCTTTGACCTCAACAAGTCCTACCCTTGTGCCAGCAAGCCGTACCGTTACCGGTGCCCAGCGCCAAAGCTGTGCCACATCACCGGATCCATCTCAGAAGATGACATCAACTCTTTCTGCTTCCACTCCGTGGCTGCACGAAATCTGCAGCTGTCTGACCTGTCCCGCTCCAGGACCCCCCCGGGCTCTCTGTCCTTGTCCAACTCCAGCGGCTCTCTCCTCCGGCAGCTGACCAAGGGAGCCCTCAACCATTCAGTCACTCCCGCTGTTCACAACCCCAAAAAAGCCATCCTCACTGTGGACACTAAGACCACAGAGATACTTGTTGCCAATGAAGTGGCTTGTAAGTTATTTGAATACAGAAGCCAGGAGCTGATTGGATTAAAGTTGACCTGTCTCTTAAGGAAGACCAATCAGACCCTCGAGGAAGCTCTGGGGGAAGAGCATTTGCAGACCAATGGGAATTTAATCATGGTGTCAGGAAAAGTgGTCGATGCAGTGAGTAGTTCTGGCATTAAGGTCCCGGTGTCTGTGTGGGCCCACAGACTGACCCTGGAGGGAAACCGCTGTTTGGTGGTGATGGAGCCAGTAGAGAGAATATCGGCTTGTGTCTCCTTCACACACAATGGCGAAATTCTGTCTTGTGATTCTGTGTTTGCCAAACTCCATGGCTACCTGAGATCTGACGAGGTGATCGGGCTTCCCATTGCCGACTTCATTCCTTCTCTGCACATCCCAGCTAACGTCAGGGAGATTCCCAAGACCCTGAGGATCCAGAGACTGACAGGCAGGTCTAGGGATGGCACCACTTTTCCCCTCAGTATAAAGCTCCAGGATGTGGTGGACTGTGGGAAAACAGATCATCTAACAGAGCAGTCCAGCAGCGCAGACTCCAGGGGAGCTGGAAAAGGTCAGTACATGACTAAAGGGACTGGTTGGTCCAGGACGCCTGATGCTGAGATGTCCAAAGATGGTGTAGAGCATCGCACACCCAACGAAGCACCACAACAGCACTCCCTGCCCCCCCGCAACGCACAGGTGTCTGCACAAGAAGAAAACTGTGGACAGCCTTCAGCAGGTTTGGGGCTGGCGTTCAGCGCAAACCTGTGGGTGTTCACAGCGATGAGCGGACTGGTGACTCTGCTTCCTGACGGCTCGATCCACAGCGTCAACAACAACTTTGCCTTGATGCTGTTTGGTTACAAGAAGACCGAACTGCAGGGGAAGAGCATCACTTTTTTGATGCCAGGTTTCTATGAGAGTCTGTGTGCCTTGGAGGAGAGCTCTCTGCCCCCCGTGGAGGACGGGCTTGGCGATCCAGTGGACTTGTGCGCAAGCATTGCAGTCGAGACAAATACTGAGGGAAACGAGTGTGGTCCGCTGCTGGCTGGAGACATGGCCATGGTGCCGCGAGAGGAGCAGGGCACCGTTCCGGGCGGGATGGGCGAGATGTTCACCGACACCAGTGCCAAGCAAAATAGCACGACGGATTTGGTGAGCGAACCTACCCGGGTCACGCCTGGGTTCAGTGAGCATGAGGGAGACACCACCAGTGCCCTCCTGCGAACCCCCTGCTTGGATGAGTCGTCTCGGGGATCCCACACGGGCGACCCACAGCCTACAGCCACAGAGGACTGTAGATCTGTGTCTCGGGCCTCCAGGCACTCAAGAGAGCTTCACTCCAAGACCGCAGGGACTCTCCCAGTTTCAAACTTGGGTAAAAATGATCTGTTGGACTCGAAGACCACAGAGAACTCCAGCTTTGAAGTAATCTCTCTGGGCAGTCAGTCCTCCTCTGGCTTTTGTGAGCAGTGGCTCGGGATCTCTGGACCAGATCTCCATGAGGTCACTGGGCCAACTTCTGGACCTCTAGATTCGGGGAAATGCCCAGACATGAAGTCCAGTGAAGGTCTATCTCGGGCCCTGCACAACCTAGACTTGAGTGGCAGCTTGGAGCTCCTACAGGCCGATCTGTCTCAGACCTCCTGCGCCACTTCCGAGCTCCTCAGAACCCCCTCGCCCTATGTGCTGGAGTCCGAGACCGAGGACACTAAAGTCGGGACCAACGTGGAGGGCCCGGCCCGGCATGGGGGAGGCAAAGGCGATCTCTTGGACATGGACCAGAGGCAGTGGGGCCCGTGTTCCGATCAAGGGCGTCTTTTAAACATGGATGACTTGAATGATGGAGGTCTGCTGAATAAAAAGCCACTCCTGCAGCCCCTCATGAATGACGATACTCCCACGACCTCCACTCCCAAAAAACAGCCCAGTGGGGCGCCGAAGGAGATCCAGGAGGGTCAATACGAGGGCAACTGCTATCACAGAGACGGATCCAGATTGAGTGTGCAGTTTGAAATCCACCGCACGGCACTTCCCAGCGGACAGCCGGTGTTCTGTGTCTGGCTGGTGAGGAACCATCACCGGATTCGGCAGGAGAAACTGAAGAGGTCGGGGCTCCTGCGCTCGAGTCGGGACAGCCCCTGCGGTTCCTTCCACGACGCCTCCGCACTCAGCCTCGGGGAGGTGATACAAGGCAGTGCGGCGCGTGGCGAGGGGCTGCGGTGCCCCCAGGACCTGGAGGAGTCTCGGGCCTGTGAGGGGCAGTTCGAAGAGGACTACCTCCCGCTCAGCGCCCTCGGCAAGGGGGCCTTCGGGTTTGTGTGGAAAGCCCAGCGGCGGAGCGATGGAGAAGAGGTGGTGGTGAAGTTCATAAGGAAGAACAAGATCGTGAGTGACTGCTGGGTGGATGATCCTGACATGGGCCGGGTCAGCCAGGAGATCGCTATACTGACCAGACTTCAGCACCCCAACATCATCAAGGTGCTGGAGGTGTTCGAGAATGAGAGCTTCTTCCAGATGGTGATGGAGAAGCACGGAGAGGGGGTGGACCTGTTCGAGTTCATCGAAAAGCAGCCCTGCCTGGACGAGCCCCTGGCCAGTTACATCTTCAGACAGCTGGTGGCCGCGGTATATTATCTGCGCCAGAGGGACATCCTACACCGAGACATCAAGGACGAGAACGTCGTCATCAACACGGACTTCCACGTCAAGCTGATCGACTTCGGGTCGGCCGCTGTGCTGAAGCCGGGGAGGCTCTTCCACACGTTCTGTGGCACCCTGGAGTACTGCTCGCCCGAGGTGCTGCTGGGAAACCCGTACGAGGGCCCGGAGCTGGAGATGTGGTCCCTTGGGGTGGCCCTGTACACCCTGCTGTTCGGGGAAAACCCTTTCTGTGAGGTAGAGGAGACCCTGGAGGCCCAGCTCAACCCCCCGTTCTGGATTTCACCAGAGCTGCACACTCTGTTGTTGGGGCTATTGCACCCCGAGCCCCGGGAGAGGACCACGCTGGAGGCGCTGCTGAGCTGCCCCTGGGTCGGCCAGCCCATCAACCTGGCGCACTACAGCTGGGAGTCGGTGTGTCTGGGCAGCGAAGGTGAGCGGGGCATCGTGGAAGCTCCCCTTTGCCGCAGTGAGATTGGTCAGGAACAGGGAGACGAGTCACTGTTGACTAACGGAGATGCTGGCTGCCCGGGGCTTTCGGATGCCAACTGGCAGCCCacgggagaggaggaggaggaggaggaagagaatgAGAATGAGGAAGGAGCGTCACTGGCTGCCCTGGAGTCTGAACTCTTCAAGTACCTAATGAGTGAGGACTGAAAAAGGCTGGAATGATGGCCTGATAGAATTAAACTGAATCCTGAAACTGGAAGACAGGTGTGTAGCTCAGGATCTGCACACGGCCTGAGGTGAATCTTGAAACTGACATATAATCTTCTTGAAACTGACTTAATTGCCACGTCCTGGGATTGCACTCAGCCCTCACCCTCTCTGGGGCAGTTTTAATGGCAGATAGGAAGTGGCGGTCGCTCATGTGAATGAAATTGATTTACATCAAACACGGTTTCATGAATCGGAGATTAGCGGACTTCCTCTTCCTCTAGTGGCCGAATGCTAAACCCTGCCTGGATGCAGACCCTGTACAGTAGAGGCTCTGACGATCACGTTGAGGACACAGGAGGTTGAAGGCTTCTGCccacttttatatttatagtcCCCACACAAAGttcacatatatttttaaatttaactatttatttgttgcatttCTTCTATAATGCCTTCCATAAAATTCTCGTTTATTTTGTGGGAATATATCCCTGGCTGAAGGAACTCTGGTGTTCTAGTTTGGCAGTAATGTTTTACTCTGTATGCAAAGTTAATTAACTACTATATAACATTCTCCGATTAACCTGAAGTACAGAATCATGCGGAGTACATAACAGGGCGTGTGAAAGGAGAAGCATTGAAGGAAAAGGCAAACTATAACAAGACACTAAATGTGGAGTACACACACTATGGAATATTATAAATCACCAAAACGGttctaattaatatttaaaatatggtatTGTAGCGCAGTGTTGAGGTGAACACTTCTACAGAGAATGTTTATATCCAgaatttcaaatgaaggatctgtatacttttttcattgcttAATTAAATGTGCATATGTCTGTAATATGCACAAGTTTCTTAAAGGAACTAAAAATATTGCACACCTGAAGTTATTTTTCTcccttaattatatttataattgtattcatatttttatgtacTATCATTTAAACTTCCTGACGCAAGTGCCTCGtcctatttttatgtttaactCCATGAAATCAGCGAAtcattaaagttattttatgaaatgttttgttgttttattgattaGACAACAGGACTGTTCATGTGACAC

Function

GO: NA

KEGG:

id description
K08801 PASK; PAS domain containing serine/threonine kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72031 lncRNA downstream 640930 40932965 ~ 40933210 (-) True G57600
TU72026 lncRNA downstream 797056 40721431 ~ 40777084 (-) True G57596
TU71955 lncRNA downstream 1230661 40339347 ~ 40343479 (-) True G57545
TU71933 lncRNA downstream 1414532 40159397 ~ 40159608 (-) True G57524
TU71768 lncRNA downstream 1699911 39873971 ~ 39874229 (-) True G57400
TU72239 lncRNA upstream 230140 41814601 ~ 41815807 (-) False AMCG00009571
TU72308 lncRNA upstream 456738 42041199 ~ 42056128 (-) False AMCG00009582
TU72332 lncRNA upstream 588797 42173258 ~ 42175707 (-) True G57858
TU72348 lncRNA upstream 620809 42205270 ~ 42205559 (-) True G57873
TU72494 lncRNA upstream 883724 42468185 ~ 42468759 (-) True G57982
AMCG00009559 mRNA downstream 1973 41570613 ~ 41572167 (-) True AMCG00009559
AMCG00009558 mRNA downstream 11993 41544905 ~ 41562147 (-) True AMCG00009558
AMCG00009561 mRNA downstream 32140 41515488 ~ 41542000 (-) True AMCG00009561
AMCG00009557 mRNA downstream 72371 41498111 ~ 41501769 (-) True AMCG00009557
AMCG00009553 mRNA downstream 149067 41417751 ~ 41425073 (-) True AMCG00009553
AMCG00009565 mRNA upstream 22336 41606797 ~ 41609389 (-) True AMCG00009565
AMCG00009566 mRNA upstream 64821 41649282 ~ 41652922 (-) True AMCG00009566
AMCG00009567 mRNA upstream 100051 41684512 ~ 41700757 (-) True AMCG00009567
AMCG00009572 mRNA upstream 203152 41787613 ~ 41788999 (-) True AMCG00009572
AMCG00009571 mRNA upstream 230098 41814559 ~ 41826934 (-) True AMCG00009571
TU71924 other downstream 1416669 40148725 ~ 40157471 (-) False AMCG00009521
TU71520 other downstream 2736576 38835316 ~ 38837564 (-) False AMCG00009472
TU71449 other downstream 2991320 38580285 ~ 38582820 (-) True G57155
TU70990 other downstream 4354064 37215960 ~ 37220076 (-) True G56800
TU70712 other downstream 5701543 35872123 ~ 35872597 (-) True G56568
TU72548 other upstream 1084666 42669127 ~ 42673707 (-) True G58025
TU72928 other upstream 1897960 43482421 ~ 43945297 (-) True G58333
TU73015 other upstream 2405050 43989511 ~ 43995654 (-) True AMCG00009672
TU73231 other upstream 2923792 44508253 ~ 44512249 (-) False AMCG00009697
TU73235 other upstream 2957433 44541894 ~ 44542809 (-) True G58584

Expression Profile