RNA id: AMCG00009562



Basic Information


Item Value
RNA id AMCG00009562
length 1056
RNA type mRNA
GC content 0.53
exon number 2
gene id AMCG00009562
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 41560388 ~ 41568832 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGCAGGAGGGGTCAAGTAGTATCTGGCCCCCAGGAGGCTACAACAAGGTGACGACTGCCTTGTCACCTGAGAAAGACATGCAGAGGGACGTCTCTGGTCAGGATCACATCCTCATCATGAACGACATCATAAAGAGCTGGGCTGACATCATGACCTTTGGCGGAGGAAGATACTTCATCGTTCCCACAGGGGTCTTTCTGTTTGCCTTGCTTCTGGCTAACCCCATATCCCTTTTCGCCATCTTCTCCAGCAGCAAACTCCTCCAAGAGACGCGATACAAACTGCTAGCCAACACCTTGATCACCGATTTACTCTATTCCTTCATCTGCTTCGCTCTGACAGCCACCAACATCTCCCCTGTGATTTTCCCCGACCTGCTCTGCGAGATTCTACTCAGCCTTCAGACGGTGGTGTTCTTTTCTGGGTTCCTGAACATCACCGCCATGGGGGTGAACATCTACTTGGCCATCAACTGGCCTCTGCAGTACAACTCCATCTTCACTCCTTCCAGGGCTGTGAAGCTCATAGTGACTATCTGGCTCCTGTCCTCCATCATCCCCCTCGTCTCGTACATCCTCCTCTCCGGTGACCAAGGCCTGCTTTGTGACATACCCGTGTGCTTCTTCAACATCCTGTTTTTTCTGCCTCACCCCAACCCCGTCGTCCAGGAGATGAACTACGTCGCCGTGGTGGTCATGTGCACCGCCTGCTCCGTTCTGGTCTTCGTGTGTTTCTACCTGCTGGTCTGGAGGACTCGGAAGTCGGGCATCTGGACCGGGATGCACTCCAAGGCCAGGCAAACCATCACCATCCACTGCCTCATTTTCTCCTTCTACTTCCTGCCCACCATCATCATGGTCATCCAGAGGGTCCTGCTCTCCTACAGGCTCATGCACATCAAGTCTATGCTTTATGTCACCATGACTGTCAGCAATGTCGTGTTGCTGATCCCCAAGGCCTTGACTCCTTACCTGCACGGCTTCAGGTGTGAGGAACTCTCCGTGGCCATCCAGTCTCTGCTCAAAGGCAGGTCCCAAATCAGTCCTTCGGGTTGA

Function


GO: NA

KEGG:

id description
K08432 GPR148; G protein-coupled receptor 148

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU72136 lncRNA upstream 60170 41499964 ~ 41500218 (+) True G57690
TU72030 lncRNA upstream 627178 40932967 ~ 40933210 (+) True G57599
TU72028 lncRNA upstream 730711 40829072 ~ 40829677 (+) True G57597
TU71954 lncRNA upstream 1217007 40339382 ~ 40343381 (+) True G57544
TU71932 lncRNA upstream 1400762 40159409 ~ 40159626 (+) True G57523
TU72199 lncRNA downstream 27397 41596229 ~ 41599122 (+) True AMCG00009563
TU72228 lncRNA downstream 180723 41749555 ~ 41750144 (+) True G57770
TU72233 lncRNA downstream 247089 41815921 ~ 41817795 (+) True G57775
TU72251 lncRNA downstream 270333 41839165 ~ 41839466 (+) True G57792
TU72317 lncRNA downstream 516447 42085279 ~ 42088145 (+) True G57843
AMCG00009554 mRNA upstream 50541 41504994 ~ 41509847 (+) True AMCG00009554
AMCG00009555 mRNA upstream 61583 41485230 ~ 41498805 (+) True AMCG00009555
AMCG00009552 mRNA upstream 80392 41476537 ~ 41479996 (+) True AMCG00009552
AMCG00009550 mRNA upstream 125189 41433263 ~ 41435199 (+) True AMCG00009550
AMCG00009551 mRNA upstream 146313 41405896 ~ 41414075 (+) True AMCG00009551
AMCG00009556 mRNA downstream 17834 41586666 ~ 41588754 (+) True AMCG00009556
AMCG00009563 mRNA downstream 27476 41596308 ~ 41599124 (+) False AMCG00009563
AMCG00009564 mRNA downstream 109720 41678552 ~ 41683695 (+) True AMCG00009564
AMCG00009568 mRNA downstream 206377 41775209 ~ 41784537 (+) True AMCG00009568
AMCG00009569 mRNA downstream 264039 41832871 ~ 41844457 (+) True AMCG00009569
TU72035 other upstream 565729 40990802 ~ 40994659 (+) True G57604
TU71881 other upstream 1455440 40102383 ~ 40104948 (+) False AMCG00009516
TU71802 other upstream 1611188 39948006 ~ 39949200 (+) True G57430
TU71670 other upstream 2123393 39434900 ~ 39436995 (+) True AMCG00009480
TU71381 other upstream 3102796 38442255 ~ 38457592 (+) True G57105
TU72303 other downstream 467186 42036018 ~ 42078241 (+) True G57830
TU72919 other downstream 2364120 43932952 ~ 43935762 (+) True G58324
TU73161 other downstream 2817665 44386497 ~ 44387964 (+) False G58522
TU73232 other downstream 2998533 44567365 ~ 44570531 (+) True AMCG00009694
TU73244 other downstream 3015730 44584562 ~ 44599328 (+) False AMCG00009700

Expression Profile