RNA id: AMCG00009563


Basic Information

Item Value
RNA id AMCG00009563
length 2089
RNA type mRNA
GC content 0.40
exon number 2
gene id AMCG00009563
representative False

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 41596229 ~ 41599124 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGGAACACAccactgctctctctcactctctctctcttgcacatCTTGAGATCCAAACACGCCCGTGTATCCGTCcatgcacagcacagcacgggAAGACTACATGTCATCATTGCACTGAAAAGGGACTGCAAGAGGACGACACTGCATGCACTTTGTTTTCGGGGATCTACGTTATAAAGAGCGGTTGCATCCATCCTtcgacatttcagttttttcctgtttctacgCTGAGTGCCATTATGTCTGAGATCCTGCCATACAGCGAGGGGAAAATGAGCGGCTATGGAGCAGACAGCGACAGTCAGATTTCCTTCAGCTGTCGGCTGCAAGACACCAACACATTCTTCGGGGCATCTCAAGCAAAAAGACCCCCCAAACTTGGACAGATCGGCAGAGCAAAGCGAGTGGTGATTGAAGATGACCGAATAGACGAGGTCCTGAAGGGCATGACGGACAAGTCCTCACCAGGTGTTTAAATATGACAGAGCCCTTGCAAACTTTTCTTTTCTCACCGGTTTGAAGCACTTTTCGGCTGTGCATGTGTTTGAGGATTGTAAGCAGAGGAGAAGGGACGAAGCGATGAAAGTGGTGACATGAAGGagggggaagaggaagaggaagagaagacGGAAAGAGAGAGCCCGAGATTGATATTGGGGTTGCTGGCAATTCTCCAAACGAAAACCCGATTTCCAAACCACTGCTGGCAGGAAGATGGCAAGATGGCTGATTCGTGCAGCTCCGTCTTTCAGTCTCTGCCTCTGTATAGCGATGGATGGACTTTCCATTTCACGACCATCTTCCAAAATGCGCTGTAAACAACAATAACCACTGGAAGGTGAAACCCATTTCCAGCCCCGTTTCTGTTGCTGTACTATAGCCTGTTTAAGCTCATGTTTCATCCGCGCGTACCattgaaaacacattgaagACGCATTGAAGGGAGCTGTTCTTTCAGCACCGCCTGAACGCAGAAGGCATCCCTATTGATGCTAGAGCTTTTTCTTAGCTGACCAATCACAGacatttcaattgcattttGTGGGAAGACTTGATGTATGTAACGtttgaaaaatatacacaagGACAATAAtactttatgttttgtttttttgtttttgttgggaGCTgcgtttttttaatcaaagtaaaataatttaattatcctATAAGGAGAACCGACGTTTTTcaacgtttttgttttgtaatgaaacTGTACAGCCTTCACAGATTGGCATCCGCACTTCATCCCTTAACTAGTTCTCAATATCGGAAGAGTTTTTCTCATCTAATGCCAGCAGGGATggtaaaaaataacacaaaaaataaataaagaaataatattgaatcaatcaatcaatcaatcaatcaatcaaaatcaaTAATGAGAAAGACTGACAGACAATATTTTTTCTCCATCTCTTTGCATGAACTTCCGATCCCGGTGCCAACGCGGGTGCCACCACCATTCCCACCTATCCTGGCACggttgtttttaacaaaaaaaatcatatttgtatttttatatctaaatatttgttatttaaagttatatGCTAGTCTAACGTCTTACAATTCACCAAGAAAAAAGTACTTTGGGAAGGATATTCAGATTGAGACTAACAGAAGATCTCAGATTTGGTTTTGTCTGTCTCATTCTATATCAAGTATTGGGGGTAATAATGATTACAAGGACTTATTgaatgtgttttggtttttgcaCACATCAATGTAAAACTATTATTAAGAAATACTGTGATTTGGGCTTCGTTGATGGGTTCGTTAGAAATGACAACTTTAGAATTGATTGCACTGTTTACGAGTATCTTCAAATAACACGTTATTTGATCGAGTTTTTGGACAttaaagttgtgtttttatttgatttattttgtaccattCCTCTGAAGAGATAATTAAATATGGTTTGTTGTGCATGAAAccttaatattttcaataatgAAACATCATTTTATGAagcaaaaaagcaacaaaaatgtCATGACATTCTAAGAATGATTCATTGTATATTATGATgccattttcactgtatttggTGAATTAATAAATGGTGAAAGAACACGT

Function

GO:

id name namespace
GO:0006469 negative regulation of protein kinase activity biological_process
GO:0004860 protein kinase inhibitor activity molecular_function
GO:0019901 protein kinase binding molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72136 lncRNA upstream 96090 41499964 ~ 41500218 (+) True G57690
TU72030 lncRNA upstream 663098 40932967 ~ 40933210 (+) True G57599
TU72028 lncRNA upstream 766631 40829072 ~ 40829677 (+) True G57597
TU71954 lncRNA upstream 1252927 40339382 ~ 40343381 (+) True G57544
TU71932 lncRNA upstream 1436682 40159409 ~ 40159626 (+) True G57523
TU72228 lncRNA downstream 150431 41749555 ~ 41750144 (+) True G57770
TU72233 lncRNA downstream 216797 41815921 ~ 41817795 (+) True G57775
TU72251 lncRNA downstream 240041 41839165 ~ 41839466 (+) True G57792
TU72317 lncRNA downstream 486155 42085279 ~ 42088145 (+) True G57843
TU72439 lncRNA downstream 803111 42402235 ~ 42402452 (+) True G57940
AMCG00009556 mRNA upstream 7554 41586666 ~ 41588754 (+) True AMCG00009556
AMCG00009562 mRNA upstream 27476 41560388 ~ 41568832 (+) True AMCG00009562
AMCG00009554 mRNA upstream 86461 41504994 ~ 41509847 (+) True AMCG00009554
AMCG00009555 mRNA upstream 97503 41485230 ~ 41498805 (+) True AMCG00009555
AMCG00009552 mRNA upstream 116312 41476537 ~ 41479996 (+) True AMCG00009552
AMCG00009564 mRNA downstream 79428 41678552 ~ 41683695 (+) True AMCG00009564
AMCG00009568 mRNA downstream 176085 41775209 ~ 41784537 (+) True AMCG00009568
AMCG00009569 mRNA downstream 233747 41832871 ~ 41844457 (+) True AMCG00009569
AMCG00009575 mRNA downstream 302709 41901833 ~ 41910118 (+) True AMCG00009575
AMCG00009577 mRNA downstream 352543 41951667 ~ 41960909 (+) True AMCG00009577
TU72035 other upstream 601649 40990802 ~ 40994659 (+) True G57604
TU71881 other upstream 1491360 40102383 ~ 40104948 (+) False AMCG00009516
TU71802 other upstream 1647108 39948006 ~ 39949200 (+) True G57430
TU71670 other upstream 2159313 39434900 ~ 39436995 (+) True AMCG00009480
TU71381 other upstream 3138716 38442255 ~ 38457592 (+) True G57105
TU72303 other downstream 436894 42036018 ~ 42078241 (+) True G57830
TU72919 other downstream 2333828 43932952 ~ 43935762 (+) True G58324
TU73161 other downstream 2787373 44386497 ~ 44387964 (+) False G58522
TU73232 other downstream 2968241 44567365 ~ 44570531 (+) True AMCG00009694
TU73244 other downstream 2985438 44584562 ~ 44599328 (+) False AMCG00009700

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00032919 True 2125 mRNA 0.41 2 NC_007113.7 44943396 ~ 44946094 (-)
grasscarp (Ctenopharyngodon idella) TU409927 True 2127 TUCP 0.42 2 CI01000152 1890858 ~ 1893459 (-)
rainbow trout (Oncorhynchus mykiss) TU409927 True 4332 lncRNA 0.37 4 NC_048569.1 5334043 ~ 5338949 (+)
rainbow trout (Oncorhynchus mykiss) TU853749 True 2226 lncRNA 0.40 2 NC_048572.1 80071647 ~ 80074536 (+)
eurasian perch (Perca fluviatilis) TU159094 False 3058 lncRNA 0.42 2 NC_053122.1 26315822 ~ 26319563 (-)