RNA id: AMCG00009564


Basic Information

Item Value
RNA id AMCG00009564
length 2375
RNA type mRNA
GC content 0.52
exon number 9
gene id AMCG00009564
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 41678552 ~ 41683695 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TAAAGGTACAATGGTAAATATGTCTGGTTGGCTTGCTCAGTGAACGGCGTATTGTGTTCAACTTCAGCCACCGGAAGTGGCCGTGGGGGACTGATTTGAGGTGACACCCGCGACTCTACGCGCAGACATGGCAGGAGCTGGGAGGAAGAAGCCTGCTGGTCCGCCGTCCCGGCTGTGGGGGACACTAAGCACAATATGGCAGGAGAAACACTGGATCCTGTTCAGGGCCGAGTACACGTACCTGGTCACGGCGCTGCTGTggctggcggagatcggcatCAACGTGTGGGTGATACACAGAGTGGCATAGATTGACTGGAAAGCCTACATGGACGAGGTGGAGGGAGTCATTAATGGCACCTACGACTATACTGAGCTCAAGGGAGACACGGGACCTCTGGTGTATCCGGCTGGGTTCGTGTACATCTTCACAGTGCTGTACTATGTCACTGGTCATGGGGTGAATATCCGTCTTGCACAGTACATATTTGCGGCCTTTTACCTCGTGACGCTGCTGCTGGTGTTTCGGATCTACCACCGCACCCAGAAGGTCCCGCcgtatgtgtttttcttcatgtgCTGTGCCTCCTATCGCATCCACTCGATCTTCGTCCTGCGTCTGTTCAACGACCCCGTGGCAATGCTGCTGCTCTTCGGGGCCCTCAACCTCTTCCTGGACGGCCACTGGACCCTGGGTTGTGGGATCTACAGGCAAGTCTGCCGACTCAAAACACAGGGCAGTTTAGCAGTATCTGTGAAGATGAATGTACTCCTCTTTGCTCCTGGTCTTCTCTTCCTGCTGCTGTGGGAGTTTGGTCTGCTAAAGACCCTGCCCAAGCTCGTTCTCTGTGCAGCTATACAGGTGTTGCTCGGCCTGCCCTTCCTGCTGGAGAACCCCCTGGGCTATCTGAGCCACTCTTTTGACCTGGGCCGCCAGTTTCTCTTCCAGTGGACGGTCAACTGGCGCTTTCTGCCCGAGGACATCTTCCTGAGCCGGTACTTCCACCTGGCCCTGCTGGGGGCCCATCTCCTCACCCTGCTGCTGTTTGCGGTGCGCCACTGGAACAGGTCCGGAGACAGTGTTGTCGCCCTGCTGAAGGACCCAGCCCAGCGCAAGGAGCCACCACAGAAACTCACTGCTGCTCATATCCTTTATGCCGGTCCTTCCCCCCGCAGCCCAGTCCCTGCTGGTCCCTCTGTGCATATAGTCTTCACCCTCTTTACCTCGAACTTCATCGGGATATGTTTCAGCCGCTCACTGCACTACCAGTTCTACGTCTGGTACTTCCACACCCTGCCCTTCCTGCTCTGGAGCGGCGGAGTGAGGAAGCTGGCTCACCTGCTCAGGGTGCTGATCCTGGGATTGATCGAACTGTCCTGGAACACCTACCCCTCGACCGTCTACAGCTCGGCTGCGTTGCATGTGTGCCACCTCATCATCCTGCTGTCCCTGTGGCACGCCCCGCCGCCCAGCGACACCGAGACCACCCCCCAACGCAAGCGCATGTGACCGGACTCTGGCTGTCCTGCCGGGACACTCACGGTGTTGGCTGCACAGACCAGGATGCGCTCTCGCCTGGGTGGGGGGTCGCAGCACAGCGCAGGCGGAGGAGAAGTCAGTCTTAAATCCAAAGAGGCCCCATTCTTTCAGTCTCTCGATACAGCAATGGGGGGGTTTCCTTTTCGATTCGGAGGCGGAAAGCAGTGCCGTCCGGAggctaaggaaagaaaaatggtcAGCTTGTCCGTCAGATTTCCGGTCTCTGTTCAGATCCCCTGCTGCGAGCACTCGATTGCTGTCTGTGTACGAAACTGAGAcgtaaaattaaaaatactcaggtatgaatacaaatatttgtactatagttttttttgcattattctaaatttaaatgtgatttttgtagCATGTTGTCtccatgtttttgtgttgaGTGAAGCTTGTAACCTGCAGAATGAAACGTGTATCGCTTTTtggaaaaactgtaaatgaatgcaaatgttCGTAGGCCTCCTGTATTTCACTTCCCTCCTGACTGTTCATGATCATTTCAGGAACTGTTTTCTCAAAATCCATTTACGTCCTCGCGGTGCTCAGTTGTTAAACACCAGTTTATACCATGGTACCATTTCATAAACACGCTCTGTGTCTCCATCTGTGTTTTCTTGATCTTCTCATTTGTGTGCCAGGGTTTTTTCATGTTgtcaaaatagaaaaacaatacaagtctgTTACCTGGGGAATCAAAAAGGCTGTTCATGtagtattattttcttacagtgggagtaagaaatacatataaGTATAATTAGATCATTTTTCACCTTTTATATAATCTtgattctgtaaaaaaaaaaaaaccacaggTGCTCTG

Function

GO: NA

KEGG:

id description
K03845 ALG3; alpha-1,3-mannosyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72199 lncRNA upstream 79430 41596229 ~ 41599122 (+) True AMCG00009563
TU72136 lncRNA upstream 178334 41499964 ~ 41500218 (+) True G57690
TU72030 lncRNA upstream 745342 40932967 ~ 40933210 (+) True G57599
TU72028 lncRNA upstream 848875 40829072 ~ 40829677 (+) True G57597
TU71954 lncRNA upstream 1335171 40339382 ~ 40343381 (+) True G57544
TU72228 lncRNA downstream 65860 41749555 ~ 41750144 (+) True G57770
TU72233 lncRNA downstream 132226 41815921 ~ 41817795 (+) True G57775
TU72251 lncRNA downstream 155470 41839165 ~ 41839466 (+) True G57792
TU72317 lncRNA downstream 401584 42085279 ~ 42088145 (+) True G57843
TU72439 lncRNA downstream 718540 42402235 ~ 42402452 (+) True G57940
AMCG00009563 mRNA upstream 79428 41596308 ~ 41599124 (+) False AMCG00009563
AMCG00009556 mRNA upstream 89798 41586666 ~ 41588754 (+) True AMCG00009556
AMCG00009562 mRNA upstream 109720 41560388 ~ 41568832 (+) True AMCG00009562
AMCG00009554 mRNA upstream 168705 41504994 ~ 41509847 (+) True AMCG00009554
AMCG00009555 mRNA upstream 179747 41485230 ~ 41498805 (+) True AMCG00009555
AMCG00009568 mRNA downstream 91514 41775209 ~ 41784537 (+) True AMCG00009568
AMCG00009569 mRNA downstream 149176 41832871 ~ 41844457 (+) True AMCG00009569
AMCG00009575 mRNA downstream 218138 41901833 ~ 41910118 (+) True AMCG00009575
AMCG00009577 mRNA downstream 267972 41951667 ~ 41960909 (+) True AMCG00009577
AMCG00009579 mRNA downstream 295842 41979537 ~ 42029964 (+) True AMCG00009579
TU72035 other upstream 683893 40990802 ~ 40994659 (+) True G57604
TU71881 other upstream 1573604 40102383 ~ 40104948 (+) False AMCG00009516
TU71802 other upstream 1729352 39948006 ~ 39949200 (+) True G57430
TU71670 other upstream 2241557 39434900 ~ 39436995 (+) True AMCG00009480
TU71381 other upstream 3220960 38442255 ~ 38457592 (+) True G57105
TU72303 other downstream 352323 42036018 ~ 42078241 (+) True G57830
TU72919 other downstream 2249257 43932952 ~ 43935762 (+) True G58324
TU73161 other downstream 2702802 44386497 ~ 44387964 (+) False G58522
TU73232 other downstream 2883670 44567365 ~ 44570531 (+) True AMCG00009694
TU73244 other downstream 2900867 44584562 ~ 44599328 (+) False AMCG00009700

Expression Profile